Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00040 and ABZR86_RS00045 are separated by 43 nucleotides ABZR86_RS00045 and ABZR86_RS00050 are separated by 252 nucleotides
ABZR86_RS00040: ABZR86_RS00040 - hypothetical protein, at 8,326 to 9,372
_RS00040
ABZR86_RS00045: ABZR86_RS00045 - hypothetical protein, at 9,416 to 10,147
_RS00045
ABZR86_RS00050: ABZR86_RS00050 - AraC family transcriptional regulator, at 10,400 to 11,257
_RS00050
Position (kb) 9
10
11 Strain fitness (log2 ratio) -2
-1
0
1
2 at 8.435 kb on + strand, within ABZR86_RS00040 at 8.435 kb on + strand, within ABZR86_RS00040 at 8.436 kb on - strand, within ABZR86_RS00040 at 8.526 kb on + strand, within ABZR86_RS00040 at 8.681 kb on + strand, within ABZR86_RS00040 at 8.815 kb on + strand, within ABZR86_RS00040 at 8.815 kb on + strand, within ABZR86_RS00040 at 8.815 kb on + strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.871 kb on + strand, within ABZR86_RS00040 at 8.997 kb on - strand, within ABZR86_RS00040 at 9.090 kb on + strand, within ABZR86_RS00040 at 9.090 kb on + strand, within ABZR86_RS00040 at 9.151 kb on + strand, within ABZR86_RS00040 at 9.152 kb on - strand, within ABZR86_RS00040 at 9.205 kb on + strand, within ABZR86_RS00040 at 9.435 kb on + strand at 9.435 kb on + strand at 9.522 kb on + strand, within ABZR86_RS00045 at 9.522 kb on + strand, within ABZR86_RS00045 at 9.523 kb on - strand, within ABZR86_RS00045 at 9.523 kb on - strand, within ABZR86_RS00045 at 9.525 kb on + strand, within ABZR86_RS00045 at 9.526 kb on - strand, within ABZR86_RS00045 at 9.532 kb on - strand, within ABZR86_RS00045 at 9.627 kb on + strand, within ABZR86_RS00045 at 9.627 kb on + strand, within ABZR86_RS00045 at 9.627 kb on + strand, within ABZR86_RS00045 at 9.627 kb on + strand, within ABZR86_RS00045 at 9.628 kb on - strand, within ABZR86_RS00045 at 9.634 kb on - strand, within ABZR86_RS00045 at 9.697 kb on - strand, within ABZR86_RS00045 at 9.727 kb on - strand, within ABZR86_RS00045 at 9.774 kb on + strand, within ABZR86_RS00045 at 9.774 kb on + strand, within ABZR86_RS00045 at 9.774 kb on + strand, within ABZR86_RS00045 at 9.774 kb on + strand, within ABZR86_RS00045 at 9.775 kb on - strand, within ABZR86_RS00045 at 9.775 kb on - strand, within ABZR86_RS00045 at 9.775 kb on - strand, within ABZR86_RS00045 at 9.775 kb on - strand, within ABZR86_RS00045 at 9.842 kb on + strand, within ABZR86_RS00045 at 9.843 kb on - strand, within ABZR86_RS00045 at 9.843 kb on - strand, within ABZR86_RS00045 at 9.967 kb on - strand, within ABZR86_RS00045 at 9.967 kb on - strand, within ABZR86_RS00045 at 9.999 kb on + strand, within ABZR86_RS00045 at 9.999 kb on + strand, within ABZR86_RS00045 at 10.000 kb on - strand, within ABZR86_RS00045 at 10.194 kb on + strand at 10.195 kb on - strand at 10.364 kb on - strand at 10.394 kb on - strand at 10.394 kb on - strand at 10.607 kb on + strand, within ABZR86_RS00050 at 11.126 kb on - strand, within ABZR86_RS00050 at 11.131 kb on + strand, within ABZR86_RS00050 at 11.131 kb on + strand, within ABZR86_RS00050 at 11.131 kb on + strand, within ABZR86_RS00050 at 11.132 kb on - strand, within ABZR86_RS00050 at 11.132 kb on - strand, within ABZR86_RS00050
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 8,435 + ABZR86_RS00040 0.10 -1.0 8,435 + ABZR86_RS00040 0.10 +0.1 8,436 - ABZR86_RS00040 0.11 -2.1 8,526 + ABZR86_RS00040 0.19 +0.5 8,681 + ABZR86_RS00040 0.34 +0.6 8,815 + ABZR86_RS00040 0.47 +2.0 8,815 + ABZR86_RS00040 0.47 -2.3 8,815 + ABZR86_RS00040 0.47 -1.7 8,816 - ABZR86_RS00040 0.47 +0.4 8,816 - ABZR86_RS00040 0.47 -1.1 8,816 - ABZR86_RS00040 0.47 -1.6 8,816 - ABZR86_RS00040 0.47 -0.2 8,816 - ABZR86_RS00040 0.47 +0.1 8,816 - ABZR86_RS00040 0.47 -0.3 8,816 - ABZR86_RS00040 0.47 +0.1 8,871 + ABZR86_RS00040 0.52 -1.6 8,997 - ABZR86_RS00040 0.64 +0.2 9,090 + ABZR86_RS00040 0.73 +0.3 9,090 + ABZR86_RS00040 0.73 -0.7 9,151 + ABZR86_RS00040 0.79 +0.0 9,152 - ABZR86_RS00040 0.79 -0.6 9,205 + ABZR86_RS00040 0.84 -0.1 9,435 + +0.0 9,435 + +0.7 9,522 + ABZR86_RS00045 0.14 -1.4 9,522 + ABZR86_RS00045 0.14 +0.1 9,523 - ABZR86_RS00045 0.15 -0.3 9,523 - ABZR86_RS00045 0.15 +0.2 9,525 + ABZR86_RS00045 0.15 +0.4 9,526 - ABZR86_RS00045 0.15 -1.1 9,532 - ABZR86_RS00045 0.16 -0.6 9,627 + ABZR86_RS00045 0.29 +0.2 9,627 + ABZR86_RS00045 0.29 +0.3 9,627 + ABZR86_RS00045 0.29 +0.0 9,627 + ABZR86_RS00045 0.29 +0.4 9,628 - ABZR86_RS00045 0.29 -0.6 9,634 - ABZR86_RS00045 0.30 +0.1 9,697 - ABZR86_RS00045 0.38 -0.6 9,727 - ABZR86_RS00045 0.42 -0.1 9,774 + ABZR86_RS00045 0.49 +0.6 9,774 + ABZR86_RS00045 0.49 -1.1 9,774 + ABZR86_RS00045 0.49 -0.4 9,774 + ABZR86_RS00045 0.49 +0.4 9,775 - ABZR86_RS00045 0.49 -0.5 9,775 - ABZR86_RS00045 0.49 +0.1 9,775 - ABZR86_RS00045 0.49 +0.5 9,775 - ABZR86_RS00045 0.49 -0.7 9,842 + ABZR86_RS00045 0.58 -0.4 9,843 - ABZR86_RS00045 0.58 -1.1 9,843 - ABZR86_RS00045 0.58 +0.4 9,967 - ABZR86_RS00045 0.75 -0.4 9,967 - ABZR86_RS00045 0.75 +0.3 9,999 + ABZR86_RS00045 0.80 -0.8 9,999 + ABZR86_RS00045 0.80 +0.2 10,000 - ABZR86_RS00045 0.80 +0.1 10,194 + -0.4 10,195 - -0.3 10,364 - -0.7 10,394 - -1.1 10,394 - -0.7 10,607 + ABZR86_RS00050 0.24 +0.5 11,126 - ABZR86_RS00050 0.85 +0.6 11,131 + ABZR86_RS00050 0.85 -0.2 11,131 + ABZR86_RS00050 0.85 -0.5 11,131 + ABZR86_RS00050 0.85 -0.3 11,132 - ABZR86_RS00050 0.85 +0.6 11,132 - ABZR86_RS00050 0.85 -0.2
Or see this region's nucleotide sequence