Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3034

Experiment: MoYLS4 with Polymyxin B sulfate 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3033 and DvMF_3034 are separated by 679 nucleotidesDvMF_3034 and DvMF_3035 are separated by 780 nucleotides DvMF_3033: DvMF_3033 - hypothetical protein (RefSeq), at 3,827,354 to 3,828,250 _3033 DvMF_3034: DvMF_3034 - 5,10-methylenetetrahydrofolate reductase (RefSeq), at 3,828,930 to 3,829,805 _3034 DvMF_3035: DvMF_3035 - glycosyl transferase family 9 (RefSeq), at 3,830,586 to 3,831,611 _3035 Position (kb) 3828 3829 3830Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3827.939 kb on + strand, within DvMF_3033at 3828.134 kb on + strand, within DvMF_3033at 3828.142 kb on - strand, within DvMF_3033at 3828.202 kb on - strandat 3828.466 kb on + strandat 3828.476 kb on + strandat 3828.492 kb on - strandat 3828.586 kb on + strandat 3828.656 kb on + strandat 3828.656 kb on + strandat 3828.656 kb on + strandat 3828.792 kb on + strandat 3828.800 kb on - strandat 3828.802 kb on + strandat 3828.825 kb on - strandat 3828.935 kb on + strandat 3829.277 kb on - strand, within DvMF_3034at 3829.441 kb on + strand, within DvMF_3034at 3829.740 kb on + strandat 3829.878 kb on + strandat 3829.900 kb on + strandat 3830.122 kb on + strandat 3830.159 kb on + strandat 3830.319 kb on - strandat 3830.339 kb on - strandat 3830.480 kb on - strandat 3830.493 kb on + strandat 3830.530 kb on - strandat 3830.769 kb on + strand, within DvMF_3035

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.25 mg/ml
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3,827,939 + DvMF_3033 0.65 +0.6
3,828,134 + DvMF_3033 0.87 -0.4
3,828,142 - DvMF_3033 0.88 -0.3
3,828,202 - +1.6
3,828,466 + -0.1
3,828,476 + -1.9
3,828,492 - -0.5
3,828,586 + -0.2
3,828,656 + -4.4
3,828,656 + -0.2
3,828,656 + -0.6
3,828,792 + +0.0
3,828,800 - -0.6
3,828,802 + -0.6
3,828,825 - +0.1
3,828,935 + -0.8
3,829,277 - DvMF_3034 0.40 -0.8
3,829,441 + DvMF_3034 0.58 -0.2
3,829,740 + +1.5
3,829,878 + -1.4
3,829,900 + -0.2
3,830,122 + -0.6
3,830,159 + -5.2
3,830,319 - -3.4
3,830,339 - -1.8
3,830,480 - +0.9
3,830,493 + -0.6
3,830,530 - -0.4
3,830,769 + DvMF_3035 0.18 -1.6

Or see this region's nucleotide sequence