Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2636

Experiment: MoYLS4 with Polymyxin B sulfate 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2634 and DvMF_2635 are separated by 270 nucleotidesDvMF_2635 and DvMF_2636 are separated by 206 nucleotidesDvMF_2636 and DvMF_R0071 are separated by 741 nucleotides DvMF_2634: DvMF_2634 - FAD dependent oxidoreductase (RefSeq), at 3,329,371 to 3,330,762 _2634 DvMF_2635: DvMF_2635 - hypothetical protein (RefSeq), at 3,331,033 to 3,331,260 _2635 DvMF_2636: DvMF_2636 - hypothetical protein (RefSeq), at 3,331,467 to 3,332,336 _2636 DvMF_R0071: DvMF_R0071 - tRNA-Glu (RefSeq), at 3,333,078 to 3,333,154 _R0071 Position (kb) 3331 3332 3333Strain fitness (log2 ratio) -3 -2 -1 0 1at 3330.471 kb on - strand, within DvMF_2634at 3330.811 kb on + strandat 3330.956 kb on + strandat 3331.032 kb on - strandat 3331.070 kb on - strand, within DvMF_2635at 3331.351 kb on - strandat 3331.759 kb on - strand, within DvMF_2636at 3331.839 kb on + strand, within DvMF_2636at 3331.839 kb on + strand, within DvMF_2636at 3331.862 kb on + strand, within DvMF_2636at 3331.863 kb on - strand, within DvMF_2636at 3331.897 kb on - strand, within DvMF_2636at 3331.897 kb on - strand, within DvMF_2636at 3332.578 kb on - strandat 3332.698 kb on + strandat 3332.698 kb on + strandat 3332.706 kb on - strandat 3332.924 kb on + strandat 3333.235 kb on + strandat 3333.255 kb on - strandat 3333.304 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.25 mg/ml
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3,330,471 - DvMF_2634 0.79 -0.8
3,330,811 + -0.7
3,330,956 + -1.0
3,331,032 - -3.1
3,331,070 - DvMF_2635 0.16 -0.6
3,331,351 - -1.9
3,331,759 - DvMF_2636 0.34 -0.3
3,331,839 + DvMF_2636 0.43 +0.2
3,331,839 + DvMF_2636 0.43 -1.3
3,331,862 + DvMF_2636 0.45 -0.0
3,331,863 - DvMF_2636 0.46 -0.1
3,331,897 - DvMF_2636 0.49 +0.0
3,331,897 - DvMF_2636 0.49 +0.3
3,332,578 - -0.6
3,332,698 + -0.3
3,332,698 + -0.5
3,332,706 - +0.1
3,332,924 + -0.3
3,333,235 + -0.8
3,333,255 - -0.2
3,333,304 + +0.3

Or see this region's nucleotide sequence