Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2488
Experiment: MoYLS4 with Polymyxin B sulfate 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Polymyxin B sulfate 0.25 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,139,698 | - | DvMF_2487 | 0.15 | -0.1 | |
3,139,725 | + | DvMF_2487 | 0.18 | +0.6 | |
3,139,993 | + | DvMF_2487 | 0.46 | +1.1 | |
3,140,025 | + | DvMF_2487 | 0.49 | -0.3 | |
3,140,025 | + | DvMF_2487 | 0.49 | -0.0 | |
3,140,035 | - | DvMF_2487 | 0.50 | -0.3 | |
3,140,298 | - | DvMF_2487 | 0.78 | -0.1 | |
3,140,340 | - | DvMF_2487 | 0.82 | -0.5 | |
3,140,368 | + | DvMF_2487 | 0.85 | +0.4 | |
3,140,403 | - | DvMF_2487 | 0.89 | -1.6 | |
3,140,487 | + | -0.4 | |||
3,140,525 | - | +0.6 | |||
3,140,619 | - | DvMF_2488 | 0.13 | +0.4 | |
3,140,754 | - | DvMF_2488 | 0.29 | -3.0 | |
3,141,231 | + | DvMF_2488 | 0.85 | +0.5 | |
3,141,540 | + | -0.8 | |||
3,141,540 | + | -4.6 | |||
3,141,540 | + | -1.4 | |||
3,141,548 | - | -4.2 | |||
3,141,548 | - | -0.3 | |||
3,141,548 | - | +0.5 | |||
3,141,636 | - | -1.0 | |||
3,141,701 | - | -1.4 | |||
3,141,863 | + | DvMF_2489 | 0.14 | -1.0 | |
3,141,864 | - | DvMF_2489 | 0.14 | -0.6 | |
3,142,177 | + | DvMF_2489 | 0.26 | -2.9 |
Or see this region's nucleotide sequence