Experiment: MoYLS4 with Polymyxin B sulfate 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2485 and DvMF_2486 overlap by 10 nucleotides DvMF_2486 and DvMF_2487 overlap by 4 nucleotides DvMF_2487 and DvMF_2488 are separated by 5 nucleotides
DvMF_2485: DvMF_2485 - ABC transporter related (RefSeq), at 3,137,784 to 3,138,614
_2485
DvMF_2486: DvMF_2486 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,138,605 to 3,139,561
_2486
DvMF_2487: DvMF_2487 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,139,558 to 3,140,505
_2487
DvMF_2488: DvMF_2488 - phosphate binding protein (RefSeq), at 3,140,511 to 3,141,353
_2488
Position (kb)
3139
3140
3141 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3138.581 kb on + strand at 3138.738 kb on + strand, within DvMF_2486 at 3138.748 kb on + strand, within DvMF_2486 at 3138.816 kb on + strand, within DvMF_2486 at 3138.819 kb on - strand, within DvMF_2486 at 3138.819 kb on - strand, within DvMF_2486 at 3138.872 kb on - strand, within DvMF_2486 at 3138.878 kb on - strand, within DvMF_2486 at 3138.880 kb on + strand, within DvMF_2486 at 3138.960 kb on - strand, within DvMF_2486 at 3138.971 kb on - strand, within DvMF_2486 at 3139.074 kb on + strand, within DvMF_2486 at 3139.105 kb on + strand, within DvMF_2486 at 3139.244 kb on + strand, within DvMF_2486 at 3139.276 kb on + strand, within DvMF_2486 at 3139.284 kb on - strand, within DvMF_2486 at 3139.367 kb on - strand, within DvMF_2486 at 3139.376 kb on + strand, within DvMF_2486 at 3139.698 kb on - strand, within DvMF_2487 at 3139.725 kb on + strand, within DvMF_2487 at 3139.993 kb on + strand, within DvMF_2487 at 3140.025 kb on + strand, within DvMF_2487 at 3140.025 kb on + strand, within DvMF_2487 at 3140.035 kb on - strand, within DvMF_2487 at 3140.298 kb on - strand, within DvMF_2487 at 3140.340 kb on - strand, within DvMF_2487 at 3140.368 kb on + strand, within DvMF_2487 at 3140.403 kb on - strand, within DvMF_2487 at 3140.487 kb on + strand at 3140.525 kb on - strand at 3140.619 kb on - strand, within DvMF_2488 at 3140.754 kb on - strand, within DvMF_2488 at 3141.231 kb on + strand, within DvMF_2488
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.25 mg/ml remove 3,138,581 + -0.6 3,138,738 + DvMF_2486 0.14 -0.1 3,138,748 + DvMF_2486 0.15 -0.9 3,138,816 + DvMF_2486 0.22 -0.3 3,138,819 - DvMF_2486 0.22 -0.1 3,138,819 - DvMF_2486 0.22 -0.8 3,138,872 - DvMF_2486 0.28 -3.4 3,138,878 - DvMF_2486 0.29 -1.6 3,138,880 + DvMF_2486 0.29 -1.9 3,138,960 - DvMF_2486 0.37 -0.4 3,138,971 - DvMF_2486 0.38 -0.8 3,139,074 + DvMF_2486 0.49 -0.5 3,139,105 + DvMF_2486 0.52 -1.0 3,139,244 + DvMF_2486 0.67 -0.1 3,139,276 + DvMF_2486 0.70 +0.6 3,139,284 - DvMF_2486 0.71 -3.9 3,139,367 - DvMF_2486 0.80 -0.4 3,139,376 + DvMF_2486 0.81 -0.5 3,139,698 - DvMF_2487 0.15 -0.1 3,139,725 + DvMF_2487 0.18 +0.6 3,139,993 + DvMF_2487 0.46 +1.1 3,140,025 + DvMF_2487 0.49 -0.3 3,140,025 + DvMF_2487 0.49 -0.0 3,140,035 - DvMF_2487 0.50 -0.3 3,140,298 - DvMF_2487 0.78 -0.1 3,140,340 - DvMF_2487 0.82 -0.5 3,140,368 + DvMF_2487 0.85 +0.4 3,140,403 - DvMF_2487 0.89 -1.6 3,140,487 + -0.4 3,140,525 - +0.6 3,140,619 - DvMF_2488 0.13 +0.4 3,140,754 - DvMF_2488 0.29 -3.0 3,141,231 + DvMF_2488 0.85 +0.5
Or see this region's nucleotide sequence