Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2402

Experiment: MoYLS4 with Polymyxin B sulfate 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2401 and DvMF_2402 are separated by 418 nucleotidesDvMF_2402 and DvMF_2403 are separated by 598 nucleotidesDvMF_2403 and DvMF_2404 are separated by 131 nucleotides DvMF_2401: DvMF_2401 - nickel transporter permease NikB (RefSeq), at 3,034,090 to 3,035,031 _2401 DvMF_2402: DvMF_2402 - nickel ABC transporter, periplasmic nickel-binding protein (RefSeq), at 3,035,450 to 3,037,066 _2402 DvMF_2403: DvMF_2403 - TOBE domain protein (RefSeq), at 3,037,665 to 3,037,874 _2403 DvMF_2404: DvMF_2404 - protein of unknown function DUF1105 (RefSeq), at 3,038,006 to 3,038,593 _2404 Position (kb) 3035 3036 3037 3038Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3034.495 kb on + strand, within DvMF_2401at 3035.151 kb on + strandat 3035.151 kb on + strandat 3035.603 kb on - strandat 3035.743 kb on - strand, within DvMF_2402at 3035.899 kb on + strand, within DvMF_2402at 3035.924 kb on - strand, within DvMF_2402at 3036.128 kb on + strand, within DvMF_2402at 3036.145 kb on + strand, within DvMF_2402at 3036.279 kb on - strand, within DvMF_2402at 3036.374 kb on - strand, within DvMF_2402at 3036.388 kb on + strand, within DvMF_2402at 3036.610 kb on + strand, within DvMF_2402at 3037.012 kb on + strandat 3037.475 kb on + strandat 3037.564 kb on - strandat 3037.671 kb on - strandat 3037.686 kb on - strand, within DvMF_2403at 3037.770 kb on + strand, within DvMF_2403at 3037.802 kb on - strand, within DvMF_2403at 3038.028 kb on - strandat 3038.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.25 mg/ml
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3,034,495 + DvMF_2401 0.43 -0.4
3,035,151 + +0.0
3,035,151 + -0.6
3,035,603 - -4.4
3,035,743 - DvMF_2402 0.18 -0.1
3,035,899 + DvMF_2402 0.28 -1.6
3,035,924 - DvMF_2402 0.29 -1.2
3,036,128 + DvMF_2402 0.42 +0.1
3,036,145 + DvMF_2402 0.43 +0.9
3,036,279 - DvMF_2402 0.51 -0.1
3,036,374 - DvMF_2402 0.57 -0.8
3,036,388 + DvMF_2402 0.58 -0.6
3,036,610 + DvMF_2402 0.72 -2.3
3,037,012 + -0.6
3,037,475 + -0.6
3,037,564 - +0.0
3,037,671 - -0.6
3,037,686 - DvMF_2403 0.10 -0.3
3,037,770 + DvMF_2403 0.50 -0.9
3,037,802 - DvMF_2403 0.65 -3.5
3,038,028 - -1.6
3,038,028 - -0.5

Or see this region's nucleotide sequence