Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1463

Experiment: MoYLS4 with Polymyxin B sulfate 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1462 and DvMF_1463 are separated by 371 nucleotidesDvMF_1463 and DvMF_1464 are separated by 165 nucleotides DvMF_1462: DvMF_1462 - phosphoglycerate mutase 1 family (RefSeq), at 1,792,258 to 1,793,007 _1462 DvMF_1463: DvMF_1463 - response regulator receiver protein (RefSeq), at 1,793,379 to 1,794,743 _1463 DvMF_1464: DvMF_1464 - Homocysteine formation from aspartate semialdehyde (DUF39 component) (from data), at 1,794,909 to 1,796,081 _1464 Position (kb) 1793 1794 1795Strain fitness (log2 ratio) -2 -1 0 1at 1792.442 kb on + strand, within DvMF_1462at 1792.745 kb on + strand, within DvMF_1462at 1792.901 kb on - strand, within DvMF_1462at 1792.901 kb on - strand, within DvMF_1462at 1792.901 kb on - strand, within DvMF_1462at 1792.968 kb on + strandat 1792.976 kb on - strandat 1793.022 kb on + strandat 1793.285 kb on - strandat 1794.260 kb on - strand, within DvMF_1463at 1795.105 kb on - strand, within DvMF_1464at 1795.246 kb on - strand, within DvMF_1464at 1795.251 kb on - strand, within DvMF_1464at 1795.388 kb on - strand, within DvMF_1464at 1795.393 kb on - strand, within DvMF_1464at 1795.553 kb on + strand, within DvMF_1464at 1795.553 kb on + strand, within DvMF_1464at 1795.602 kb on + strand, within DvMF_1464at 1795.609 kb on + strand, within DvMF_1464at 1795.610 kb on - strand, within DvMF_1464at 1795.692 kb on - strand, within DvMF_1464at 1795.699 kb on - strand, within DvMF_1464

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.25 mg/ml
remove
1,792,442 + DvMF_1462 0.25 -0.2
1,792,745 + DvMF_1462 0.65 +0.7
1,792,901 - DvMF_1462 0.86 -0.3
1,792,901 - DvMF_1462 0.86 -0.4
1,792,901 - DvMF_1462 0.86 -0.9
1,792,968 + -0.5
1,792,976 - -0.5
1,793,022 + -0.5
1,793,285 - -0.3
1,794,260 - DvMF_1463 0.65 +1.2
1,795,105 - DvMF_1464 0.17 -0.2
1,795,246 - DvMF_1464 0.29 -0.9
1,795,251 - DvMF_1464 0.29 -0.4
1,795,388 - DvMF_1464 0.41 -0.4
1,795,393 - DvMF_1464 0.41 -0.6
1,795,553 + DvMF_1464 0.55 -0.3
1,795,553 + DvMF_1464 0.55 +0.2
1,795,602 + DvMF_1464 0.59 -0.5
1,795,609 + DvMF_1464 0.60 -2.2
1,795,610 - DvMF_1464 0.60 +0.1
1,795,692 - DvMF_1464 0.67 +0.1
1,795,699 - DvMF_1464 0.67 -0.4

Or see this region's nucleotide sequence