Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0817

Experiment: MoYLS4 with Polymyxin B sulfate 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0816 and DvMF_0817 are separated by 243 nucleotidesDvMF_0817 and DvMF_0818 are separated by 108 nucleotidesDvMF_0818 and DvMF_0819 are separated by 115 nucleotides DvMF_0816: DvMF_0816 - Acetyl-CoA carboxylase (RefSeq), at 983,140 to 985,404 _0816 DvMF_0817: DvMF_0817 - Biotin carboxylase (RefSeq), at 985,648 to 987,066 _0817 DvMF_0818: DvMF_0818 - type IV pilus assembly PilZ (RefSeq), at 987,175 to 987,705 _0818 DvMF_0819: DvMF_0819 - OmpA/MotB domain protein (RefSeq), at 987,821 to 988,555 _0819 Position (kb) 985 986 987 988Strain fitness (log2 ratio) -2 -1 0 1at 987.179 kb on - strandat 987.323 kb on + strand, within DvMF_0818at 987.428 kb on + strand, within DvMF_0818at 987.538 kb on + strand, within DvMF_0818at 987.740 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.25 mg/ml
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987,179 - -2.0
987,323 + DvMF_0818 0.28 -0.3
987,428 + DvMF_0818 0.48 +0.3
987,538 + DvMF_0818 0.68 +0.2
987,740 - -0.1

Or see this region's nucleotide sequence