Experiment: MoYLS4 with Polymyxin B sulfate 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0636 and DvMF_0637 overlap by 4 nucleotides DvMF_0637 and DvMF_0638 are separated by 5 nucleotides DvMF_0638 and DvMF_0639 overlap by 4 nucleotides
DvMF_0636: DvMF_0636 - coenzyme F390 synthetase-like protein (RefSeq), at 759,237 to 760,457
_0636
DvMF_0637: DvMF_0637 - Radical SAM domain protein (RefSeq), at 760,454 to 762,220
_0637
DvMF_0638: DvMF_0638 - hypothetical protein (RefSeq), at 762,226 to 762,693
_0638
DvMF_0639: DvMF_0639 - Methyltransferase type 11 (RefSeq), at 762,690 to 763,613
_0639
Position (kb) 760
761
762
763 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 759.490 kb on - strand, within DvMF_0636 at 759.506 kb on + strand, within DvMF_0636 at 759.581 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.665 kb on + strand, within DvMF_0636 at 759.704 kb on - strand, within DvMF_0636 at 759.920 kb on + strand, within DvMF_0636 at 759.920 kb on + strand, within DvMF_0636 at 760.200 kb on - strand, within DvMF_0636 at 760.336 kb on + strand at 760.529 kb on + strand at 760.537 kb on - strand at 760.537 kb on - strand at 760.579 kb on - strand at 760.725 kb on + strand, within DvMF_0637 at 760.762 kb on - strand, within DvMF_0637 at 760.779 kb on - strand, within DvMF_0637 at 761.133 kb on + strand, within DvMF_0637 at 761.141 kb on - strand, within DvMF_0637 at 761.155 kb on - strand, within DvMF_0637 at 761.157 kb on + strand, within DvMF_0637 at 761.209 kb on + strand, within DvMF_0637 at 761.214 kb on - strand, within DvMF_0637 at 761.545 kb on - strand, within DvMF_0637 at 761.567 kb on + strand, within DvMF_0637 at 761.712 kb on - strand, within DvMF_0637 at 761.728 kb on - strand, within DvMF_0637 at 761.863 kb on + strand, within DvMF_0637 at 761.873 kb on - strand, within DvMF_0637 at 762.057 kb on - strand at 762.130 kb on - strand at 762.359 kb on + strand, within DvMF_0638 at 762.490 kb on - strand, within DvMF_0638 at 762.521 kb on + strand, within DvMF_0638 at 762.529 kb on - strand, within DvMF_0638 at 762.858 kb on + strand, within DvMF_0639 at 762.866 kb on - strand, within DvMF_0639 at 762.882 kb on + strand, within DvMF_0639 at 763.063 kb on + strand, within DvMF_0639 at 763.066 kb on - strand, within DvMF_0639 at 763.071 kb on - strand, within DvMF_0639 at 763.076 kb on - strand, within DvMF_0639 at 763.162 kb on + strand, within DvMF_0639
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.25 mg/ml remove 759,490 - DvMF_0636 0.21 -0.2 759,506 + DvMF_0636 0.22 -0.0 759,581 + DvMF_0636 0.28 -0.5 759,588 + DvMF_0636 0.29 -3.3 759,588 + DvMF_0636 0.29 -1.0 759,588 + DvMF_0636 0.29 -0.7 759,588 + DvMF_0636 0.29 -0.5 759,596 - DvMF_0636 0.29 -0.4 759,596 - DvMF_0636 0.29 -0.7 759,596 - DvMF_0636 0.29 -0.2 759,596 - DvMF_0636 0.29 +0.3 759,665 + DvMF_0636 0.35 +0.2 759,704 - DvMF_0636 0.38 -0.3 759,920 + DvMF_0636 0.56 -0.9 759,920 + DvMF_0636 0.56 -3.1 760,200 - DvMF_0636 0.79 -0.2 760,336 + +0.4 760,529 + -0.3 760,537 - -0.9 760,537 - +0.5 760,579 - -1.1 760,725 + DvMF_0637 0.15 -0.6 760,762 - DvMF_0637 0.17 -0.8 760,779 - DvMF_0637 0.18 -0.4 761,133 + DvMF_0637 0.38 -1.3 761,141 - DvMF_0637 0.39 -0.3 761,155 - DvMF_0637 0.40 +0.2 761,157 + DvMF_0637 0.40 -0.7 761,209 + DvMF_0637 0.43 +0.5 761,214 - DvMF_0637 0.43 +1.1 761,545 - DvMF_0637 0.62 -1.2 761,567 + DvMF_0637 0.63 -0.8 761,712 - DvMF_0637 0.71 -1.0 761,728 - DvMF_0637 0.72 -1.0 761,863 + DvMF_0637 0.80 -0.6 761,873 - DvMF_0637 0.80 -1.0 762,057 - -0.5 762,130 - +0.5 762,359 + DvMF_0638 0.28 -3.6 762,490 - DvMF_0638 0.56 -0.3 762,521 + DvMF_0638 0.63 -3.0 762,529 - DvMF_0638 0.65 -0.4 762,858 + DvMF_0639 0.18 -0.8 762,866 - DvMF_0639 0.19 -0.9 762,882 + DvMF_0639 0.21 -1.1 763,063 + DvMF_0639 0.40 -0.7 763,066 - DvMF_0639 0.41 +0.1 763,071 - DvMF_0639 0.41 -0.5 763,076 - DvMF_0639 0.42 -1.2 763,162 + DvMF_0639 0.51 +0.0
Or see this region's nucleotide sequence