Experiment: MoYLS4 with Polymyxin B sulfate 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0009 and DvMF_0010 are separated by 164 nucleotides DvMF_0010 and DvMF_0011 are separated by 2 nucleotides
DvMF_0009: DvMF_0009 - protein of unknown function DUF814 (RefSeq), at 10,937 to 12,919
_0009
DvMF_0010: DvMF_0010 - diguanylate phosphodiesterase (RefSeq), at 13,084 to 14,547
_0010
DvMF_0011: DvMF_0011 - L-serine ammonia-lyase (EC 4.3.1.17) <small>(from data)</small>, at 14,550 to 15,929
_0011
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.245 kb on - strand, within DvMF_0009 at 12.287 kb on + strand, within DvMF_0009 at 12.414 kb on + strand, within DvMF_0009 at 12.497 kb on - strand, within DvMF_0009 at 12.641 kb on - strand, within DvMF_0009 at 12.716 kb on - strand, within DvMF_0009 at 12.822 kb on + strand at 12.839 kb on + strand at 12.908 kb on + strand at 13.217 kb on + strand at 13.288 kb on - strand, within DvMF_0010 at 13.396 kb on + strand, within DvMF_0010 at 13.419 kb on - strand, within DvMF_0010 at 13.581 kb on - strand, within DvMF_0010 at 13.585 kb on - strand, within DvMF_0010 at 13.762 kb on - strand, within DvMF_0010 at 13.771 kb on + strand, within DvMF_0010 at 13.819 kb on - strand, within DvMF_0010 at 13.819 kb on - strand, within DvMF_0010 at 13.970 kb on - strand, within DvMF_0010 at 14.039 kb on + strand, within DvMF_0010 at 14.201 kb on - strand, within DvMF_0010 at 14.213 kb on + strand, within DvMF_0010 at 14.218 kb on + strand, within DvMF_0010 at 14.233 kb on + strand, within DvMF_0010 at 14.238 kb on + strand, within DvMF_0010 at 14.366 kb on - strand, within DvMF_0010 at 14.468 kb on + strand at 14.691 kb on + strand, within DvMF_0011 at 14.798 kb on - strand, within DvMF_0011 at 14.846 kb on + strand, within DvMF_0011 at 14.854 kb on - strand, within DvMF_0011 at 14.924 kb on + strand, within DvMF_0011 at 14.990 kb on + strand, within DvMF_0011 at 15.002 kb on + strand, within DvMF_0011 at 15.032 kb on + strand, within DvMF_0011 at 15.093 kb on - strand, within DvMF_0011 at 15.323 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.460 kb on - strand, within DvMF_0011
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.25 mg/ml remove 12,245 - DvMF_0009 0.66 -3.1 12,287 + DvMF_0009 0.68 +0.0 12,414 + DvMF_0009 0.74 -0.2 12,497 - DvMF_0009 0.79 -0.6 12,641 - DvMF_0009 0.86 -0.9 12,716 - DvMF_0009 0.90 -0.3 12,822 + -0.7 12,839 + +0.1 12,908 + -0.0 13,217 + +0.6 13,288 - DvMF_0010 0.14 -0.2 13,396 + DvMF_0010 0.21 +0.7 13,419 - DvMF_0010 0.23 +1.4 13,581 - DvMF_0010 0.34 +1.6 13,585 - DvMF_0010 0.34 +1.0 13,762 - DvMF_0010 0.46 +1.1 13,771 + DvMF_0010 0.47 +0.8 13,819 - DvMF_0010 0.50 +0.1 13,819 - DvMF_0010 0.50 +0.3 13,970 - DvMF_0010 0.61 +0.9 14,039 + DvMF_0010 0.65 +0.8 14,201 - DvMF_0010 0.76 -0.9 14,213 + DvMF_0010 0.77 +1.2 14,218 + DvMF_0010 0.77 +1.1 14,233 + DvMF_0010 0.78 +0.4 14,238 + DvMF_0010 0.79 +1.0 14,366 - DvMF_0010 0.88 -0.2 14,468 + +2.0 14,691 + DvMF_0011 0.10 -1.6 14,798 - DvMF_0011 0.18 -1.1 14,846 + DvMF_0011 0.21 -1.0 14,854 - DvMF_0011 0.22 -0.5 14,924 + DvMF_0011 0.27 -0.5 14,990 + DvMF_0011 0.32 -0.7 15,002 + DvMF_0011 0.33 -0.3 15,032 + DvMF_0011 0.35 -0.5 15,093 - DvMF_0011 0.39 +0.6 15,323 + DvMF_0011 0.56 -0.3 15,452 + DvMF_0011 0.65 +0.2 15,452 + DvMF_0011 0.65 -0.3 15,452 + DvMF_0011 0.65 +0.2 15,452 + DvMF_0011 0.65 -1.1 15,452 + DvMF_0011 0.65 +0.0 15,460 - DvMF_0011 0.66 -0.1
Or see this region's nucleotide sequence