Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0542 and Shewana3_0543 overlap by 4 nucleotides Shewana3_0543 and Shewana3_0544 are separated by 9 nucleotides
Shewana3_0542: Shewana3_0542 - multi-sensor signal transduction histidine kinase (RefSeq), at 636,365 to 638,524
_0542
Shewana3_0543: Shewana3_0543 - response regulator receiver protein (RefSeq), at 638,521 to 638,955
_0543
Shewana3_0544: Shewana3_0544 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase (RefSeq), at 638,965 to 640,683
_0544
Position (kb) 638
639 Strain fitness (log2 ratio) -1
0
1 at 638.001 kb on + strand, within Shewana3_0542 at 638.185 kb on + strand, within Shewana3_0542 at 638.269 kb on - strand, within Shewana3_0542 at 638.350 kb on - strand at 638.361 kb on + strand at 638.454 kb on + strand at 638.462 kb on - strand at 638.518 kb on + strand at 638.518 kb on + strand at 638.629 kb on + strand, within Shewana3_0543 at 638.862 kb on - strand, within Shewana3_0543 at 639.146 kb on + strand, within Shewana3_0544 at 639.154 kb on - strand, within Shewana3_0544 at 639.154 kb on - strand, within Shewana3_0544 at 639.179 kb on + strand, within Shewana3_0544 at 639.183 kb on + strand, within Shewana3_0544 at 639.242 kb on + strand, within Shewana3_0544 at 639.242 kb on + strand, within Shewana3_0544 at 639.693 kb on + strand, within Shewana3_0544 at 639.724 kb on + strand, within Shewana3_0544 at 639.732 kb on - strand, within Shewana3_0544 at 639.775 kb on - strand, within Shewana3_0544 at 639.828 kb on - strand, within Shewana3_0544
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 638,001 + Shewana3_0542 0.76 +0.3 638,185 + Shewana3_0542 0.84 -0.8 638,269 - Shewana3_0542 0.88 -1.5 638,350 - +0.9 638,361 + -0.8 638,454 + +0.2 638,462 - +0.5 638,518 + +0.6 638,518 + -0.8 638,629 + Shewana3_0543 0.25 -0.9 638,862 - Shewana3_0543 0.78 +0.4 639,146 + Shewana3_0544 0.11 +0.4 639,154 - Shewana3_0544 0.11 +0.6 639,154 - Shewana3_0544 0.11 +0.5 639,179 + Shewana3_0544 0.12 -1.1 639,183 + Shewana3_0544 0.13 +0.7 639,242 + Shewana3_0544 0.16 -1.1 639,242 + Shewana3_0544 0.16 +0.4 639,693 + Shewana3_0544 0.42 -0.7 639,724 + Shewana3_0544 0.44 +0.1 639,732 - Shewana3_0544 0.45 +0.9 639,775 - Shewana3_0544 0.47 -0.9 639,828 - Shewana3_0544 0.50 +0.4
Or see this region's nucleotide sequence