Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4159 and Shewana3_4160 are separated by 627 nucleotides Shewana3_4160 and Shewana3_4161 overlap by 4 nucleotides Shewana3_4161 and Shewana3_4162 are separated by 7 nucleotides
Shewana3_4159: Shewana3_4159 - putative transposase (RefSeq), at 21,137 to 21,307
_4159
Shewana3_4160: Shewana3_4160 - S-adenosylhomocysteine hydrolase (RefSeq), at 21,935 to 22,345
_4160
Shewana3_4161: Shewana3_4161 - hypothetical protein (RefSeq), at 22,342 to 23,283
_4161
Shewana3_4162: Shewana3_4162 - type I restriction-modification system, M subunit (RefSeq), at 23,291 to 25,915
_4162
Position (kb) 21
22
23 Strain fitness (log2 ratio) -2
-1
0
1 at 21.097 kb on - strand at 21.182 kb on + strand, within Shewana3_4159 at 21.356 kb on - strand at 21.377 kb on - strand at 21.458 kb on - strand at 21.537 kb on + strand at 21.633 kb on + strand at 21.650 kb on + strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.895 kb on - strand at 21.901 kb on - strand at 22.613 kb on - strand, within Shewana3_4161 at 22.766 kb on + strand, within Shewana3_4161 at 22.836 kb on + strand, within Shewana3_4161 at 22.848 kb on + strand, within Shewana3_4161 at 22.915 kb on + strand, within Shewana3_4161 at 23.000 kb on + strand, within Shewana3_4161
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 21,097 - -1.0 21,182 + Shewana3_4159 0.26 -0.6 21,356 - -0.2 21,377 - -0.4 21,458 - -0.6 21,537 + +0.9 21,633 + +0.6 21,650 + +0.1 21,716 - -0.3 21,716 - +0.8 21,895 - -2.6 21,901 - -1.0 22,613 - Shewana3_4161 0.29 +0.6 22,766 + Shewana3_4161 0.45 -1.0 22,836 + Shewana3_4161 0.52 -0.6 22,848 + Shewana3_4161 0.54 +1.7 22,915 + Shewana3_4161 0.61 -1.1 23,000 + Shewana3_4161 0.70 +0.5
Or see this region's nucleotide sequence