Strain Fitness in Shewanella loihica PV-4 around Shew_2491

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2490 and Shew_2491 are separated by 82 nucleotidesShew_2491 and Shew_2492 are separated by 125 nucleotides Shew_2490: Shew_2490 - anion transporter (RefSeq), at 2,929,103 to 2,930,494 _2490 Shew_2491: Shew_2491 - methionine gamma-lyase (RefSeq), at 2,930,577 to 2,931,752 _2491 Shew_2492: Shew_2492 - hypothetical protein (RefSeq), at 2,931,878 to 2,932,972 _2492 Position (kb) 2930 2931 2932Strain fitness (log2 ratio) -1 0 1at 2929.816 kb on - strand, within Shew_2490at 2930.203 kb on - strand, within Shew_2490at 2930.294 kb on - strand, within Shew_2490at 2930.749 kb on - strand, within Shew_2491at 2931.061 kb on - strand, within Shew_2491at 2931.144 kb on + strand, within Shew_2491at 2931.152 kb on - strand, within Shew_2491at 2931.164 kb on - strand, within Shew_2491at 2931.407 kb on + strand, within Shew_2491at 2931.428 kb on - strand, within Shew_2491at 2931.428 kb on - strand, within Shew_2491at 2931.720 kb on - strandat 2932.564 kb on + strand, within Shew_2492at 2932.572 kb on - strand, within Shew_2492at 2932.572 kb on - strand, within Shew_2492at 2932.572 kb on - strand, within Shew_2492at 2932.657 kb on + strand, within Shew_2492at 2932.665 kb on - strand, within Shew_2492

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,929,816 - Shew_2490 0.51 +0.8
2,930,203 - Shew_2490 0.79 -0.2
2,930,294 - Shew_2490 0.86 -1.2
2,930,749 - Shew_2491 0.15 +1.0
2,931,061 - Shew_2491 0.41 -0.1
2,931,144 + Shew_2491 0.48 +0.1
2,931,152 - Shew_2491 0.49 +0.1
2,931,164 - Shew_2491 0.50 -0.5
2,931,407 + Shew_2491 0.71 -0.1
2,931,428 - Shew_2491 0.72 +0.5
2,931,428 - Shew_2491 0.72 +0.0
2,931,720 - +0.8
2,932,564 + Shew_2492 0.63 +0.4
2,932,572 - Shew_2492 0.63 +1.0
2,932,572 - Shew_2492 0.63 -0.0
2,932,572 - Shew_2492 0.63 -0.6
2,932,657 + Shew_2492 0.71 +1.6
2,932,665 - Shew_2492 0.72 -0.1

Or see this region's nucleotide sequence