Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0453 and Shew_0454 are separated by 405 nucleotides Shew_0454 and Shew_0455 are separated by 165 nucleotides Shew_0455 and Shew_0456 are separated by 47 nucleotides
Shew_0453: Shew_0453 - response regulator receiver protein (RefSeq), at 503,415 to 504,410
_0453
Shew_0454: Shew_0454 - enoyl-CoA hydratase (RefSeq), at 504,816 to 505,625
_0454
Shew_0455: Shew_0455 - hypothetical protein (RefSeq), at 505,791 to 506,294
_0455
Shew_0456: Shew_0456 - hypothetical protein (RefSeq), at 506,342 to 507,226
_0456
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1 at 504.038 kb on + strand, within Shew_0453 at 504.055 kb on + strand, within Shew_0453 at 504.839 kb on + strand at 504.842 kb on - strand at 504.862 kb on + strand at 504.911 kb on + strand, within Shew_0454 at 505.019 kb on - strand, within Shew_0454 at 505.324 kb on + strand, within Shew_0454 at 506.038 kb on + strand, within Shew_0455 at 506.209 kb on - strand, within Shew_0455 at 506.383 kb on - strand at 506.406 kb on + strand at 506.542 kb on - strand, within Shew_0456 at 506.561 kb on - strand, within Shew_0456 at 506.617 kb on - strand, within Shew_0456 at 506.621 kb on + strand, within Shew_0456
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 504,038 + Shew_0453 0.63 -2.5 504,055 + Shew_0453 0.64 -0.4 504,839 + +0.0 504,842 - -0.5 504,862 + +0.6 504,911 + Shew_0454 0.12 +0.3 505,019 - Shew_0454 0.25 +0.0 505,324 + Shew_0454 0.63 -0.2 506,038 + Shew_0455 0.49 -0.1 506,209 - Shew_0455 0.83 -0.1 506,383 - +0.3 506,406 + +0.1 506,542 - Shew_0456 0.23 +0.6 506,561 - Shew_0456 0.25 +0.2 506,617 - Shew_0456 0.31 +0.5 506,621 + Shew_0456 0.32 +0.1
Or see this region's nucleotide sequence