Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0057 and Shew_0058 are separated by 167 nucleotides Shew_0058 and Shew_0059 are separated by 51 nucleotides Shew_0059 and Shew_0060 are separated by 27 nucleotides Shew_0060 and Shew_0061 are separated by 50 nucleotides
Shew_0057: Shew_0057 - cytoplasmic chaperone TorD family protein (RefSeq), at 68,787 to 69,452
_0057
Shew_0058: Shew_0058 - twin-arginine translocation pathway signal (RefSeq), at 69,620 to 69,820
_0058
Shew_0059: Shew_0059 - molybdopterin oxidoreductase (RefSeq), at 69,872 to 72,721
_0059
Shew_0060: Shew_0060 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 72,749 to 73,339
_0060
Shew_0061: Shew_0061 - formate dehydrogenase, gamma subunit (RefSeq), at 73,390 to 74,397
_0061
Position (kb) 69
70
71
72
73 Strain fitness (log2 ratio) -2
-1
0
1 at 68.991 kb on - strand, within Shew_0057 at 69.146 kb on + strand, within Shew_0057 at 69.329 kb on + strand, within Shew_0057 at 69.472 kb on - strand at 69.506 kb on + strand at 69.638 kb on + strand at 69.671 kb on + strand, within Shew_0058 at 69.671 kb on + strand, within Shew_0058 at 69.679 kb on - strand, within Shew_0058 at 69.679 kb on - strand, within Shew_0058 at 69.679 kb on - strand, within Shew_0058 at 69.679 kb on - strand, within Shew_0058 at 69.681 kb on + strand, within Shew_0058 at 69.757 kb on + strand, within Shew_0058 at 69.855 kb on + strand at 69.863 kb on - strand at 69.934 kb on - strand at 70.083 kb on + strand at 70.367 kb on - strand, within Shew_0059 at 70.381 kb on + strand, within Shew_0059 at 70.419 kb on - strand, within Shew_0059 at 70.601 kb on + strand, within Shew_0059 at 71.257 kb on + strand, within Shew_0059 at 71.265 kb on - strand, within Shew_0059 at 71.375 kb on - strand, within Shew_0059 at 71.405 kb on - strand, within Shew_0059 at 71.488 kb on - strand, within Shew_0059 at 71.490 kb on + strand, within Shew_0059 at 71.490 kb on + strand, within Shew_0059 at 71.495 kb on + strand, within Shew_0059 at 71.503 kb on - strand, within Shew_0059 at 71.503 kb on - strand, within Shew_0059 at 71.664 kb on - strand, within Shew_0059 at 71.677 kb on + strand, within Shew_0059 at 71.687 kb on + strand, within Shew_0059 at 71.953 kb on + strand, within Shew_0059 at 71.970 kb on - strand, within Shew_0059 at 72.064 kb on + strand, within Shew_0059 at 72.122 kb on - strand, within Shew_0059 at 72.192 kb on - strand, within Shew_0059 at 72.204 kb on - strand, within Shew_0059 at 72.204 kb on - strand, within Shew_0059 at 72.261 kb on + strand, within Shew_0059 at 72.261 kb on + strand, within Shew_0059 at 72.266 kb on + strand, within Shew_0059 at 72.269 kb on - strand, within Shew_0059 at 72.271 kb on + strand, within Shew_0059 at 72.372 kb on - strand, within Shew_0059 at 72.415 kb on + strand, within Shew_0059 at 72.556 kb on - strand at 72.614 kb on - strand at 72.629 kb on - strand at 72.644 kb on + strand at 72.987 kb on + strand, within Shew_0060 at 72.987 kb on + strand, within Shew_0060 at 72.987 kb on + strand, within Shew_0060 at 72.995 kb on - strand, within Shew_0060 at 73.003 kb on - strand, within Shew_0060 at 73.133 kb on + strand, within Shew_0060 at 73.141 kb on - strand, within Shew_0060 at 73.206 kb on + strand, within Shew_0060 at 73.365 kb on - strand at 73.374 kb on + strand at 73.638 kb on + strand, within Shew_0061
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 68,991 - Shew_0057 0.31 -0.2 69,146 + Shew_0057 0.54 -0.4 69,329 + Shew_0057 0.81 +0.1 69,472 - +0.5 69,506 + +0.2 69,638 + -0.8 69,671 + Shew_0058 0.25 -0.2 69,671 + Shew_0058 0.25 -0.6 69,679 - Shew_0058 0.29 +0.0 69,679 - Shew_0058 0.29 -0.4 69,679 - Shew_0058 0.29 -0.8 69,679 - Shew_0058 0.29 -1.1 69,681 + Shew_0058 0.30 -0.7 69,757 + Shew_0058 0.68 -0.3 69,855 + -0.1 69,863 - -0.8 69,934 - -0.9 70,083 + -1.2 70,367 - Shew_0059 0.17 -0.5 70,381 + Shew_0059 0.18 -0.7 70,419 - Shew_0059 0.19 -0.1 70,601 + Shew_0059 0.26 -0.5 71,257 + Shew_0059 0.49 -0.8 71,265 - Shew_0059 0.49 -0.2 71,375 - Shew_0059 0.53 -0.7 71,405 - Shew_0059 0.54 +0.3 71,488 - Shew_0059 0.57 -0.7 71,490 + Shew_0059 0.57 -0.8 71,490 + Shew_0059 0.57 -0.6 71,495 + Shew_0059 0.57 -0.7 71,503 - Shew_0059 0.57 -0.9 71,503 - Shew_0059 0.57 -1.6 71,664 - Shew_0059 0.63 -0.4 71,677 + Shew_0059 0.63 -1.3 71,687 + Shew_0059 0.64 -0.8 71,953 + Shew_0059 0.73 -0.4 71,970 - Shew_0059 0.74 -0.2 72,064 + Shew_0059 0.77 -0.6 72,122 - Shew_0059 0.79 -0.6 72,192 - Shew_0059 0.81 -0.8 72,204 - Shew_0059 0.82 -1.5 72,204 - Shew_0059 0.82 -0.5 72,261 + Shew_0059 0.84 -0.6 72,261 + Shew_0059 0.84 -1.0 72,266 + Shew_0059 0.84 -0.5 72,269 - Shew_0059 0.84 -0.2 72,271 + Shew_0059 0.84 -0.6 72,372 - Shew_0059 0.88 -0.7 72,415 + Shew_0059 0.89 -0.8 72,556 - -1.9 72,614 - -0.1 72,629 - +0.1 72,644 + -1.3 72,987 + Shew_0060 0.40 -1.4 72,987 + Shew_0060 0.40 -1.2 72,987 + Shew_0060 0.40 -0.4 72,995 - Shew_0060 0.42 -0.6 73,003 - Shew_0060 0.43 -0.3 73,133 + Shew_0060 0.65 -0.5 73,141 - Shew_0060 0.66 -0.4 73,206 + Shew_0060 0.77 -1.7 73,365 - +0.0 73,374 + -0.2 73,638 + Shew_0061 0.25 -1.8
Or see this region's nucleotide sequence