Experiment: Growth in KM OG2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recJ and Synpcc7942_0518 are separated by 59 nucleotides Synpcc7942_0518 and Synpcc7942_0519 are separated by 63 nucleotides Synpcc7942_0519 and Synpcc7942_0520 are separated by 49 nucleotides
Synpcc7942_0517: recJ - exonuclease RecJ, at 502,006 to 504,333
recJ
Synpcc7942_0518: Synpcc7942_0518 - hypothetical protein, at 504,393 to 505,556
_0518
Synpcc7942_0519: Synpcc7942_0519 - hypothetical protein, at 505,620 to 506,138
_0519
Synpcc7942_0520: Synpcc7942_0520 - hypothetical protein, at 506,188 to 506,829
_0520
Position (kb) 504
505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 503.396 kb on + strand, within recJ at 503.396 kb on + strand, within recJ at 503.396 kb on + strand, within recJ at 503.399 kb on - strand, within recJ at 503.401 kb on + strand, within recJ at 503.401 kb on + strand, within recJ at 503.402 kb on + strand, within recJ at 503.404 kb on - strand, within recJ at 503.420 kb on + strand, within recJ at 503.422 kb on + strand, within recJ at 503.427 kb on + strand, within recJ at 503.428 kb on - strand, within recJ at 503.428 kb on - strand, within recJ at 503.428 kb on - strand, within recJ at 503.434 kb on + strand, within recJ at 503.447 kb on - strand, within recJ at 503.485 kb on + strand, within recJ at 503.493 kb on - strand, within recJ at 503.518 kb on + strand, within recJ at 503.644 kb on + strand, within recJ at 503.650 kb on + strand at 503.651 kb on - strand, within recJ at 503.651 kb on - strand, within recJ at 503.655 kb on + strand, within recJ at 503.658 kb on - strand, within recJ at 503.673 kb on + strand, within recJ at 503.673 kb on + strand, within recJ at 503.676 kb on - strand, within recJ at 503.685 kb on - strand, within recJ at 503.701 kb on - strand, within recJ at 503.717 kb on - strand, within recJ at 503.732 kb on - strand, within recJ at 503.736 kb on - strand, within recJ at 503.759 kb on + strand, within recJ at 503.767 kb on - strand, within recJ at 503.767 kb on - strand, within recJ at 503.767 kb on - strand, within recJ at 503.767 kb on - strand, within recJ at 503.793 kb on + strand, within recJ at 503.811 kb on - strand, within recJ at 503.831 kb on - strand, within recJ at 503.856 kb on + strand, within recJ at 503.859 kb on - strand, within recJ at 503.865 kb on + strand, within recJ at 503.884 kb on + strand, within recJ at 503.889 kb on + strand, within recJ at 503.897 kb on - strand, within recJ at 503.897 kb on - strand, within recJ at 503.897 kb on - strand, within recJ at 503.911 kb on - strand, within recJ at 503.914 kb on + strand, within recJ at 503.920 kb on + strand, within recJ at 503.920 kb on + strand, within recJ at 503.927 kb on + strand, within recJ at 503.933 kb on + strand, within recJ at 503.935 kb on + strand at 503.935 kb on - strand, within recJ at 503.940 kb on + strand, within recJ at 503.943 kb on - strand, within recJ at 503.952 kb on + strand, within recJ at 503.972 kb on + strand, within recJ at 503.972 kb on + strand, within recJ at 503.980 kb on - strand, within recJ at 504.001 kb on + strand, within recJ at 504.025 kb on - strand, within recJ at 504.075 kb on - strand, within recJ at 504.097 kb on + strand, within recJ at 504.097 kb on + strand, within recJ at 504.106 kb on - strand at 504.144 kb on + strand at 504.152 kb on - strand at 504.152 kb on - strand at 504.152 kb on - strand at 504.152 kb on - strand at 504.162 kb on - strand at 504.166 kb on - strand at 504.173 kb on + strand at 504.213 kb on - strand at 504.240 kb on - strand at 504.250 kb on + strand at 504.264 kb on - strand at 504.266 kb on + strand at 504.276 kb on + strand at 504.312 kb on - strand at 504.330 kb on + strand at 504.330 kb on + strand at 504.349 kb on - strand at 504.349 kb on - strand at 504.349 kb on - strand at 504.351 kb on - strand at 504.353 kb on + strand at 504.361 kb on - strand at 504.397 kb on + strand at 504.409 kb on + strand at 504.409 kb on + strand at 504.545 kb on - strand, within Synpcc7942_0518 at 504.666 kb on + strand, within Synpcc7942_0518 at 504.666 kb on + strand, within Synpcc7942_0518 at 504.704 kb on - strand, within Synpcc7942_0518 at 504.920 kb on - strand, within Synpcc7942_0518 at 504.945 kb on + strand, within Synpcc7942_0518 at 504.945 kb on + strand, within Synpcc7942_0518 at 504.974 kb on - strand, within Synpcc7942_0518 at 505.026 kb on - strand, within Synpcc7942_0518 at 505.066 kb on + strand, within Synpcc7942_0518 at 505.078 kb on + strand, within Synpcc7942_0518 at 505.122 kb on - strand, within Synpcc7942_0518 at 505.187 kb on - strand, within Synpcc7942_0518 at 505.383 kb on + strand, within Synpcc7942_0518 at 505.424 kb on - strand, within Synpcc7942_0518 at 505.480 kb on + strand at 505.480 kb on + strand at 505.488 kb on - strand at 505.548 kb on + strand at 505.548 kb on + strand at 505.550 kb on + strand at 505.556 kb on - strand at 505.568 kb on + strand at 505.576 kb on - strand at 505.576 kb on - strand at 505.579 kb on + strand at 505.601 kb on + strand at 505.607 kb on - strand at 505.609 kb on + strand at 505.632 kb on + strand at 505.680 kb on + strand, within Synpcc7942_0519 at 505.696 kb on - strand, within Synpcc7942_0519 at 505.725 kb on + strand, within Synpcc7942_0519 at 505.781 kb on + strand, within Synpcc7942_0519 at 505.789 kb on - strand, within Synpcc7942_0519 at 505.796 kb on + strand, within Synpcc7942_0519 at 505.796 kb on + strand, within Synpcc7942_0519 at 505.804 kb on - strand, within Synpcc7942_0519 at 505.804 kb on - strand, within Synpcc7942_0519 at 505.804 kb on - strand, within Synpcc7942_0519 at 505.813 kb on - strand, within Synpcc7942_0519 at 505.819 kb on - strand, within Synpcc7942_0519 at 505.829 kb on - strand, within Synpcc7942_0519 at 505.841 kb on - strand, within Synpcc7942_0519 at 505.864 kb on + strand, within Synpcc7942_0519 at 505.883 kb on + strand, within Synpcc7942_0519 at 505.887 kb on - strand, within Synpcc7942_0519 at 505.889 kb on + strand, within Synpcc7942_0519 at 505.916 kb on + strand, within Synpcc7942_0519 at 505.989 kb on + strand, within Synpcc7942_0519 at 505.997 kb on - strand, within Synpcc7942_0519 at 506.004 kb on - strand, within Synpcc7942_0519 at 506.015 kb on + strand, within Synpcc7942_0519 at 506.043 kb on + strand, within Synpcc7942_0519 at 506.099 kb on - strand at 506.099 kb on - strand at 506.099 kb on - strand at 506.111 kb on - strand at 506.111 kb on - strand at 506.139 kb on + strand at 506.185 kb on + strand at 506.194 kb on + strand at 506.271 kb on + strand, within Synpcc7942_0520 at 506.290 kb on - strand, within Synpcc7942_0520 at 506.290 kb on - strand, within Synpcc7942_0520 at 506.291 kb on - strand, within Synpcc7942_0520 at 506.370 kb on - strand, within Synpcc7942_0520 at 506.372 kb on + strand, within Synpcc7942_0520 at 506.372 kb on + strand, within Synpcc7942_0520 at 506.373 kb on + strand, within Synpcc7942_0520 at 506.375 kb on + strand, within Synpcc7942_0520 at 506.380 kb on + strand, within Synpcc7942_0520 at 506.380 kb on - strand, within Synpcc7942_0520 at 506.452 kb on + strand, within Synpcc7942_0520 at 506.470 kb on + strand, within Synpcc7942_0520 at 506.470 kb on + strand, within Synpcc7942_0520 at 506.475 kb on + strand, within Synpcc7942_0520 at 506.478 kb on - strand, within Synpcc7942_0520 at 506.478 kb on - strand, within Synpcc7942_0520 at 506.478 kb on - strand, within Synpcc7942_0520 at 506.479 kb on - strand, within Synpcc7942_0520 at 506.554 kb on + strand, within Synpcc7942_0520
Per-strain Table
Position Strand Gene LocusTag Fraction Growth in KM OG2 remove 503,396 + recJ Synpcc7942_0517 0.60 +0.0 503,396 + recJ Synpcc7942_0517 0.60 -0.1 503,396 + recJ Synpcc7942_0517 0.60 -1.2 503,399 - recJ Synpcc7942_0517 0.60 -1.7 503,401 + recJ Synpcc7942_0517 0.60 -0.4 503,401 + recJ Synpcc7942_0517 0.60 -0.9 503,402 + recJ Synpcc7942_0517 0.60 -0.0 503,404 - recJ Synpcc7942_0517 0.60 +0.1 503,420 + recJ Synpcc7942_0517 0.61 +0.1 503,422 + recJ Synpcc7942_0517 0.61 +0.6 503,427 + recJ Synpcc7942_0517 0.61 -0.3 503,428 - recJ Synpcc7942_0517 0.61 -0.3 503,428 - recJ Synpcc7942_0517 0.61 +0.6 503,428 - recJ Synpcc7942_0517 0.61 -0.3 503,434 + recJ Synpcc7942_0517 0.61 +0.6 503,447 - recJ Synpcc7942_0517 0.62 +0.2 503,485 + recJ Synpcc7942_0517 0.64 -0.0 503,493 - recJ Synpcc7942_0517 0.64 +0.3 503,518 + recJ Synpcc7942_0517 0.65 -1.3 503,644 + recJ Synpcc7942_0517 0.70 -0.8 503,650 + -1.2 503,651 - recJ Synpcc7942_0517 0.71 -1.0 503,651 - recJ Synpcc7942_0517 0.71 -0.9 503,655 + recJ Synpcc7942_0517 0.71 +0.6 503,658 - recJ Synpcc7942_0517 0.71 -0.1 503,673 + recJ Synpcc7942_0517 0.72 +0.3 503,673 + recJ Synpcc7942_0517 0.72 +0.2 503,676 - recJ Synpcc7942_0517 0.72 +0.7 503,685 - recJ Synpcc7942_0517 0.72 +1.2 503,701 - recJ Synpcc7942_0517 0.73 -2.2 503,717 - recJ Synpcc7942_0517 0.73 +0.1 503,732 - recJ Synpcc7942_0517 0.74 -0.4 503,736 - recJ Synpcc7942_0517 0.74 -0.0 503,759 + recJ Synpcc7942_0517 0.75 -0.4 503,767 - recJ Synpcc7942_0517 0.76 +0.2 503,767 - recJ Synpcc7942_0517 0.76 -0.2 503,767 - recJ Synpcc7942_0517 0.76 -0.6 503,767 - recJ Synpcc7942_0517 0.76 -0.6 503,793 + recJ Synpcc7942_0517 0.77 +1.0 503,811 - recJ Synpcc7942_0517 0.78 +0.2 503,831 - recJ Synpcc7942_0517 0.78 +0.3 503,856 + recJ Synpcc7942_0517 0.79 -1.4 503,859 - recJ Synpcc7942_0517 0.80 +0.1 503,865 + recJ Synpcc7942_0517 0.80 -0.1 503,884 + recJ Synpcc7942_0517 0.81 +0.4 503,889 + recJ Synpcc7942_0517 0.81 -1.8 503,897 - recJ Synpcc7942_0517 0.81 -0.2 503,897 - recJ Synpcc7942_0517 0.81 -0.5 503,897 - recJ Synpcc7942_0517 0.81 +0.3 503,911 - recJ Synpcc7942_0517 0.82 -0.5 503,914 + recJ Synpcc7942_0517 0.82 -1.1 503,920 + recJ Synpcc7942_0517 0.82 -1.0 503,920 + recJ Synpcc7942_0517 0.82 +0.4 503,927 + recJ Synpcc7942_0517 0.83 +0.5 503,933 + recJ Synpcc7942_0517 0.83 -0.3 503,935 + -0.8 503,935 - recJ Synpcc7942_0517 0.83 -0.5 503,940 + recJ Synpcc7942_0517 0.83 -0.6 503,943 - recJ Synpcc7942_0517 0.83 -3.1 503,952 + recJ Synpcc7942_0517 0.84 +0.6 503,972 + recJ Synpcc7942_0517 0.84 -0.2 503,972 + recJ Synpcc7942_0517 0.84 -0.6 503,980 - recJ Synpcc7942_0517 0.85 -0.4 504,001 + recJ Synpcc7942_0517 0.86 +0.5 504,025 - recJ Synpcc7942_0517 0.87 -0.5 504,075 - recJ Synpcc7942_0517 0.89 -0.1 504,097 + recJ Synpcc7942_0517 0.90 +0.9 504,097 + recJ Synpcc7942_0517 0.90 -0.7 504,106 - +1.0 504,144 + -0.3 504,152 - -0.2 504,152 - -0.2 504,152 - +0.8 504,152 - +0.3 504,162 - -0.7 504,166 - -0.0 504,173 + +0.5 504,213 - +0.3 504,240 - +0.1 504,250 + -0.4 504,264 - +0.9 504,266 + -0.3 504,276 + -0.5 504,312 - +0.3 504,330 + +0.6 504,330 + -1.1 504,349 - +0.3 504,349 - -2.6 504,349 - -0.3 504,351 - +0.3 504,353 + +0.9 504,361 - +0.1 504,397 + -2.1 504,409 + -0.2 504,409 + -1.3 504,545 - Synpcc7942_0518 0.13 -2.8 504,666 + Synpcc7942_0518 0.23 -0.6 504,666 + Synpcc7942_0518 0.23 -1.4 504,704 - Synpcc7942_0518 0.27 -1.6 504,920 - Synpcc7942_0518 0.45 -1.9 504,945 + Synpcc7942_0518 0.47 -3.5 504,945 + Synpcc7942_0518 0.47 -1.5 504,974 - Synpcc7942_0518 0.50 -2.7 505,026 - Synpcc7942_0518 0.54 -1.7 505,066 + Synpcc7942_0518 0.58 -1.0 505,078 + Synpcc7942_0518 0.59 -0.7 505,122 - Synpcc7942_0518 0.63 -0.8 505,187 - Synpcc7942_0518 0.68 -1.4 505,383 + Synpcc7942_0518 0.85 -2.9 505,424 - Synpcc7942_0518 0.89 -1.3 505,480 + -1.7 505,480 + +0.6 505,488 - -1.2 505,548 + -1.3 505,548 + +0.7 505,550 + +0.5 505,556 - -0.4 505,568 + +0.1 505,576 - +0.9 505,576 - -0.3 505,579 + -0.0 505,601 + -0.8 505,607 - -0.2 505,609 + +0.4 505,632 + +0.3 505,680 + Synpcc7942_0519 0.12 +0.9 505,696 - Synpcc7942_0519 0.15 +0.1 505,725 + Synpcc7942_0519 0.20 +0.8 505,781 + Synpcc7942_0519 0.31 +0.3 505,789 - Synpcc7942_0519 0.33 +0.4 505,796 + Synpcc7942_0519 0.34 -0.2 505,796 + Synpcc7942_0519 0.34 -0.5 505,804 - Synpcc7942_0519 0.35 -0.3 505,804 - Synpcc7942_0519 0.35 +0.7 505,804 - Synpcc7942_0519 0.35 +0.1 505,813 - Synpcc7942_0519 0.37 -0.5 505,819 - Synpcc7942_0519 0.38 -0.2 505,829 - Synpcc7942_0519 0.40 +0.7 505,841 - Synpcc7942_0519 0.43 +0.7 505,864 + Synpcc7942_0519 0.47 -0.5 505,883 + Synpcc7942_0519 0.51 +0.3 505,887 - Synpcc7942_0519 0.51 +0.6 505,889 + Synpcc7942_0519 0.52 -0.2 505,916 + Synpcc7942_0519 0.57 -0.1 505,989 + Synpcc7942_0519 0.71 -0.9 505,997 - Synpcc7942_0519 0.73 +0.6 506,004 - Synpcc7942_0519 0.74 -1.1 506,015 + Synpcc7942_0519 0.76 -0.7 506,043 + Synpcc7942_0519 0.82 +0.2 506,099 - +0.7 506,099 - +0.2 506,099 - -0.3 506,111 - +1.0 506,111 - +0.4 506,139 + +0.2 506,185 + +0.3 506,194 + +0.0 506,271 + Synpcc7942_0520 0.13 -0.9 506,290 - Synpcc7942_0520 0.16 +0.4 506,290 - Synpcc7942_0520 0.16 -0.1 506,291 - Synpcc7942_0520 0.16 -0.0 506,370 - Synpcc7942_0520 0.28 +0.3 506,372 + Synpcc7942_0520 0.29 +1.2 506,372 + Synpcc7942_0520 0.29 +0.0 506,373 + Synpcc7942_0520 0.29 -0.2 506,375 + Synpcc7942_0520 0.29 -0.9 506,380 + Synpcc7942_0520 0.30 -0.4 506,380 - Synpcc7942_0520 0.30 -0.6 506,452 + Synpcc7942_0520 0.41 -0.4 506,470 + Synpcc7942_0520 0.44 +0.8 506,470 + Synpcc7942_0520 0.44 -0.3 506,475 + Synpcc7942_0520 0.45 -0.3 506,478 - Synpcc7942_0520 0.45 +0.3 506,478 - Synpcc7942_0520 0.45 -1.4 506,478 - Synpcc7942_0520 0.45 +0.0 506,479 - Synpcc7942_0520 0.45 -0.3 506,554 + Synpcc7942_0520 0.57 -0.0
Or see this region's nucleotide sequence