Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07730

Experiment: R2A with Nickel (II) chloride 0.3125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 0.3125 mM
1,680,007	+				+0.4
1,680,007	+				-0.2
1,680,008	-				+0.6
1,680,008	-				+1.4
1,680,008	-				+0.5
1,680,008	-				-1.9
1,680,042	+				+1.6
1,680,042	+				-1.8
1,680,042	+				-1.4
1,680,042	+				+0.7
1,680,042	+				-0.1
1,680,042	+				-1.3
1,680,042	+				+0.3
1,680,042	+				-1.0
1,680,042	+				+0.5
1,680,042	+				+0.7
1,680,043	-				+1.5
1,680,043	-				-0.3
1,680,043	-				-0.1
1,680,043	-				-1.1
1,680,043	-				+0.0
1,680,043	-				-0.7
1,680,043	-				-1.0
1,680,043	-				-0.4
1,680,043	-				-1.0
1,680,043	-				+0.0
1,680,043	-				-0.3
1,680,043	-				+0.1
1,680,043	-				-0.7
1,680,043	-				-0.3
1,680,043	-				-0.3
1,680,043	-				+0.7
1,680,043	-				+0.9
1,680,043	-				-0.7
1,680,043	-				+0.3
1,680,043	-				-1.9
1,680,043	-				-0.6
1,680,043	-				+0.4
1,680,043	-				+0.0
1,680,067	+				+1.0
1,680,266	+		LRK54_RS07725	0.21	+0.0
1,680,266	+		LRK54_RS07725	0.21	-1.7
1,680,266	+		LRK54_RS07725	0.21	-0.3
1,680,266	+		LRK54_RS07725	0.21	+0.7
1,680,266	+		LRK54_RS07725	0.21	-0.1
1,680,266	+		LRK54_RS07725	0.21	-0.3
1,680,266	+		LRK54_RS07725	0.21	+0.9
1,680,266	+		LRK54_RS07725	0.21	+0.0
1,680,266	+		LRK54_RS07725	0.21	-0.8
1,680,266	+		LRK54_RS07725	0.21	+1.3
1,680,267	-		LRK54_RS07725	0.21	-0.7
1,680,267	-		LRK54_RS07725	0.21	-0.8
1,680,267	-		LRK54_RS07725	0.21	+0.7
1,680,267	-		LRK54_RS07725	0.21	-2.3
1,680,267	-		LRK54_RS07725	0.21	+2.1
1,680,267	-		LRK54_RS07725	0.21	-0.4
1,680,484	+		LRK54_RS07725	0.47	+0.1
1,680,484	+		LRK54_RS07725	0.47	-0.1
1,680,484	+		LRK54_RS07725	0.47	+0.4
1,680,497	+		LRK54_RS07725	0.48	-1.0
1,680,497	+		LRK54_RS07725	0.48	+0.7
1,680,497	+		LRK54_RS07725	0.48	-0.0
1,680,498	-		LRK54_RS07725	0.48	-0.0
1,680,832	+		LRK54_RS07725	0.87	+0.3
1,680,832	+		LRK54_RS07725	0.87	-0.8
1,680,832	+		LRK54_RS07725	0.87	-1.5
1,680,832	+		LRK54_RS07725	0.87	-0.2
1,680,832	+		LRK54_RS07725	0.87	-1.8
1,680,832	+		LRK54_RS07725	0.87	-0.3
1,680,832	+		LRK54_RS07725	0.87	-0.7
1,680,832	+		LRK54_RS07725	0.87	-0.5
1,680,832	+		LRK54_RS07725	0.87	+0.0
1,680,832	+		LRK54_RS07725	0.87	-0.1
1,680,832	+		LRK54_RS07725	0.87	-0.1
1,680,833	-		LRK54_RS07725	0.87	+0.2
1,680,833	-		LRK54_RS07725	0.87	+0.4
1,680,833	-		LRK54_RS07725	0.87	+0.7
1,680,833	-		LRK54_RS07725	0.87	+2.7
1,680,833	-		LRK54_RS07725	0.87	-0.8
1,680,833	-		LRK54_RS07725	0.87	+1.7
1,680,833	-		LRK54_RS07725	0.87	+2.5
1,680,833	-		LRK54_RS07725	0.87	+0.2
1,680,836	+		LRK54_RS07725	0.88	+1.3
1,680,836	+		LRK54_RS07725	0.88	-0.8
1,680,836	+		LRK54_RS07725	0.88	-1.5
1,680,836	+		LRK54_RS07725	0.88	-0.6
1,680,836	+		LRK54_RS07725	0.88	-0.3
1,680,836	+		LRK54_RS07725	0.88	+0.7
1,680,836	+		LRK54_RS07725	0.88	-0.0
1,680,836	+		LRK54_RS07725	0.88	+1.3
1,680,836	+		LRK54_RS07725	0.88	-0.4
1,680,836	+		LRK54_RS07725	0.88	+1.3
1,680,836	+		LRK54_RS07725	0.88	+0.0
1,680,836	+		LRK54_RS07725	0.88	-1.0
1,680,836	+		LRK54_RS07725	0.88	+2.0
1,680,836	+		LRK54_RS07725	0.88	+0.3
1,680,836	+		LRK54_RS07725	0.88	-0.1
1,680,836	+		LRK54_RS07725	0.88	+0.7
1,680,836	+		LRK54_RS07725	0.88	-0.0
1,680,836	+		LRK54_RS07725	0.88	+1.3
1,680,836	+		LRK54_RS07725	0.88	-0.3
1,680,836	+		LRK54_RS07725	0.88	+0.7
1,680,836	+		LRK54_RS07725	0.88	+0.3
1,680,836	+		LRK54_RS07725	0.88	-0.1
1,680,836	+		LRK54_RS07725	0.88	+0.3
1,680,836	+		LRK54_RS07725	0.88	+2.1
1,680,836	+		LRK54_RS07725	0.88	-0.5
1,680,836	+		LRK54_RS07725	0.88	+0.1
1,680,836	+		LRK54_RS07725	0.88	-0.0
1,680,836	+		LRK54_RS07725	0.88	-1.1
1,680,836	+		LRK54_RS07725	0.88	+0.4
1,680,837	-		LRK54_RS07725	0.88	-0.5
1,680,837	-		LRK54_RS07725	0.88	-0.2
1,680,837	-		LRK54_RS07725	0.88	-0.3
1,680,837	-		LRK54_RS07725	0.88	-0.3
1,680,837	-		LRK54_RS07725	0.88	-0.4
1,680,837	-		LRK54_RS07725	0.88	+0.3
1,680,837	-		LRK54_RS07725	0.88	-0.1
1,680,837	-		LRK54_RS07725	0.88	-0.6
1,680,837	-		LRK54_RS07725	0.88	+2.3
1,680,837	-		LRK54_RS07725	0.88	-2.2
1,680,837	-		LRK54_RS07725	0.88	-0.3
1,680,837	-		LRK54_RS07725	0.88	-0.5
1,680,837	-		LRK54_RS07725	0.88	-1.6
1,680,837	-		LRK54_RS07725	0.88	-1.6
1,680,837	-		LRK54_RS07725	0.88	-0.7
1,680,837	-		LRK54_RS07725	0.88	+0.7
1,680,837	-		LRK54_RS07725	0.88	-1.4
1,680,837	-		LRK54_RS07725	0.88	-0.2
1,680,837	-		LRK54_RS07725	0.88	+0.1
1,680,837	-		LRK54_RS07725	0.88	+0.0
1,680,837	-		LRK54_RS07725	0.88	+0.7
1,680,837	-		LRK54_RS07725	0.88	+0.2
1,680,837	-		LRK54_RS07725	0.88	-0.6
1,680,837	-		LRK54_RS07725	0.88	-0.4
1,680,837	-		LRK54_RS07725	0.88	-0.3
1,680,837	-		LRK54_RS07725	0.88	-0.5
1,680,837	-		LRK54_RS07725	0.88	-1.9
1,680,837	-		LRK54_RS07725	0.88	-0.2
1,680,837	-		LRK54_RS07725	0.88	-3.6
1,680,837	-		LRK54_RS07725	0.88	-1.1
1,680,837	-		LRK54_RS07725	0.88	+1.9
1,680,837	-		LRK54_RS07725	0.88	-0.7
1,680,837	-		LRK54_RS07725	0.88	+0.7
1,680,931	+				-0.3
1,680,931	+				-0.8
1,680,931	+				-0.3
1,680,931	+				-0.6
1,680,931	+				-1.8
1,680,931	+				+0.3
1,680,931	+				-0.4
1,680,931	+				-0.1
1,680,931	+				-0.7
1,680,931	+				-0.0
1,680,931	+				-0.8
1,680,931	+				-0.3
1,680,931	+				-0.1
1,680,931	+				-2.6
1,680,931	+				+0.6
1,680,931	+				-0.2
1,680,931	+				+0.2
1,680,932	-				-0.6
1,680,932	-				+0.2
1,680,932	-				-0.0
1,680,932	-				+0.5
1,680,932	-				-0.5
1,680,932	-				+0.1
1,680,932	-				-0.8
1,680,935	+				+0.0
1,680,935	+				+0.6
1,680,935	+				-0.5
1,680,935	+				-0.2
1,680,935	+				+0.3
1,680,935	+				-0.1
1,680,935	+				-0.5
1,680,935	+				-0.9
1,680,935	+				-0.8
1,680,935	+				+0.7
1,680,935	+				-0.5
1,680,935	+				+0.7
1,680,935	+				-1.3
1,680,935	+				+0.6
1,680,935	+				-0.6
1,680,935	+				-0.8
1,680,935	+				-0.7
1,680,935	+				-1.1
1,680,935	+				+0.3
1,680,935	+				+0.9
1,680,935	+				+2.3
1,680,935	+				-0.4
1,680,935	+				+0.6
1,680,935	+				-0.8
1,680,935	+				-1.4
1,680,935	+				-1.4
1,680,935	+				+0.2
1,680,935	+				+0.3
1,680,935	+				-0.7
1,680,935	+				-0.2
1,680,935	+				-0.5
1,680,935	+				-0.6
1,680,935	+				-0.8
1,680,935	+				-0.4
1,680,935	+				-0.6
1,680,935	+				-2.1
1,680,935	+				+1.0
1,680,935	+				+0.7
1,680,935	+				-1.1
1,680,935	+				+0.8
1,680,936	-				+0.3
1,680,936	-				-0.0
1,680,936	-				-0.4
1,680,936	-				-0.2
1,680,936	-				+0.5
1,680,936	-				-0.1
1,680,936	-				+0.4
1,680,936	-				-0.3
1,680,936	-				-0.2
1,680,936	-				+0.7
1,680,936	-				+0.1
1,680,936	-				-0.1
1,680,936	-				-0.6
1,680,936	-				-1.5
1,680,936	-				-0.3
1,680,936	-				-0.1
1,680,936	-				+0.1
1,680,936	-				+0.5
1,680,936	-				-0.5
1,680,936	-				+0.3
1,680,936	-				+2.3
1,680,936	-				+0.3
1,680,936	-				-2.0
1,680,936	-				-0.2
1,680,936	-				-0.2
1,680,936	-				+0.7
1,680,936	-				+0.2
1,680,936	-				+0.6
1,680,936	-				-0.9
1,680,936	-				+0.5
1,680,936	-				+0.3
1,680,936	-				+0.0
1,680,936	-				-1.4
1,680,936	-				+1.2
1,680,936	-				-2.5
1,680,936	-				+0.1
1,680,936	-				-0.6
1,680,936	-				+0.7
1,681,022	+				+0.9
1,681,022	+				+0.7
1,681,022	+				+1.2
1,681,022	+				-0.2
1,681,022	+				-1.6
1,681,022	+				+0.2
1,681,022	+				-2.3
1,681,022	+				-0.4
1,681,023	-				+0.2
1,681,023	-				-0.1
1,681,023	-				-0.5
1,681,023	-				-0.2
1,681,023	-				-0.0
1,681,023	-				+1.2
1,681,023	-				+1.1
1,681,241	+		LRK54_RS07730	0.28	-0.3
1,681,241	+		LRK54_RS07730	0.28	+0.1
1,681,241	+		LRK54_RS07730	0.28	+0.2
1,681,241	+		LRK54_RS07730	0.28	-0.2
1,681,241	+		LRK54_RS07730	0.28	+0.3
1,681,241	+		LRK54_RS07730	0.28	+0.3
1,681,241	+		LRK54_RS07730	0.28	+0.3
1,681,242	-		LRK54_RS07730	0.29	+1.4
1,681,242	-		LRK54_RS07730	0.29	+0.2
1,681,242	-		LRK54_RS07730	0.29	-0.5
1,681,242	-		LRK54_RS07730	0.29	-0.4
1,681,242	-		LRK54_RS07730	0.29	-0.0
1,681,242	-		LRK54_RS07730	0.29	+0.3
1,681,242	-		LRK54_RS07730	0.29	+0.6
1,681,242	-		LRK54_RS07730	0.29	+2.1
1,681,242	-		LRK54_RS07730	0.29	+0.3
1,681,242	-		LRK54_RS07730	0.29	-0.4
1,681,242	-		LRK54_RS07730	0.29	+0.3
1,681,242	-		LRK54_RS07730	0.29	+0.4
1,681,242	-		LRK54_RS07730	0.29	-0.2
1,681,242	-		LRK54_RS07730	0.29	+1.7
1,681,305	-		LRK54_RS07730	0.36	-0.0
1,681,305	-		LRK54_RS07730	0.36	+0.4
1,681,305	-		LRK54_RS07730	0.36	+1.3
1,681,352	+		LRK54_RS07730	0.41	-3.0
1,681,352	+		LRK54_RS07730	0.41	+0.7
1,681,353	-		LRK54_RS07730	0.41	+0.7
1,681,422	+		LRK54_RS07730	0.49	+1.1
1,681,422	+		LRK54_RS07730	0.49	+0.0
1,681,422	+		LRK54_RS07730	0.49	+1.3
1,681,423	-		LRK54_RS07730	0.49	+0.6
1,681,423	-		LRK54_RS07730	0.49	-0.1
1,681,423	-		LRK54_RS07730	0.49	+0.5
1,681,469	+		LRK54_RS07730	0.55	+0.6
1,681,470	-		LRK54_RS07730	0.55	-0.0
1,681,616	+		LRK54_RS07730	0.72	+1.3
1,681,616	+		LRK54_RS07730	0.72	-0.6
1,681,616	+		LRK54_RS07730	0.72	+0.1
1,681,616	+		LRK54_RS07730	0.72	+0.9
1,681,616	+		LRK54_RS07730	0.72	-0.1
1,681,617	-		LRK54_RS07730	0.72	+2.5
1,681,617	-		LRK54_RS07730	0.72	+0.1
1,681,617	-		LRK54_RS07730	0.72	-1.0
1,681,617	-		LRK54_RS07730	0.72	+0.7
1,681,617	-		LRK54_RS07730	0.72	+0.4
1,681,617	-		LRK54_RS07730	0.72	+0.8
1,681,748	+		LRK54_RS07730	0.87	-0.5
1,681,748	+		LRK54_RS07730	0.87	-0.5
1,681,748	+		LRK54_RS07730	0.87	-1.3
1,681,748	+		LRK54_RS07730	0.87	+0.6
1,681,805	+				-0.3
1,681,805	+				-1.1
1,681,805	+				+0.4
1,681,805	+				-0.1
1,681,805	+				+0.3
1,681,805	+				-1.0
1,681,805	+				+0.4
1,681,805	+				-1.6
1,681,805	+				+0.2
1,681,805	+				-1.3
1,681,805	+				-0.1
1,681,805	+				-0.7
1,681,805	+				+0.2
1,681,805	+				-0.4
1,681,805	+				-1.3
1,681,805	+				-0.2
1,681,806	-				-1.2
1,681,806	-				-0.9
1,681,806	-				+1.8
1,681,806	-				+0.4
1,681,806	-				-0.3
1,681,806	-				+1.3
1,681,806	-				-0.1
1,681,806	-				-0.6
1,681,806	-				-0.6
1,681,806	-				-0.0
1,681,806	-				+0.3
1,681,806	-				+0.1
1,681,806	-				+0.5
1,681,806	-				+1.3
1,681,950	+		LRK54_RS07735	0.13	-0.1
1,681,950	+		LRK54_RS07735	0.13	+0.7
1,681,950	+		LRK54_RS07735	0.13	-1.5
1,681,950	+		LRK54_RS07735	0.13	-1.1
1,681,950	+		LRK54_RS07735	0.13	-1.0
1,681,950	+		LRK54_RS07735	0.13	+1.2
1,681,950	+		LRK54_RS07735	0.13	+0.7
1,681,950	+		LRK54_RS07735	0.13	+4.3
1,681,950	+		LRK54_RS07735	0.13	-0.3
1,681,950	+		LRK54_RS07735	0.13	-0.3
1,681,950	+		LRK54_RS07735	0.13	+1.2
1,681,950	+		LRK54_RS07735	0.13	+1.3
1,681,950	+		LRK54_RS07735	0.13	+1.3
1,681,950	+		LRK54_RS07735	0.13	-0.4
1,681,950	+		LRK54_RS07735	0.13	-1.0
1,681,950	+		LRK54_RS07735	0.13	-1.9
1,681,950	+		LRK54_RS07735	0.13	-0.6
1,681,950	+		LRK54_RS07735	0.13	-0.5
1,681,950	+		LRK54_RS07735	0.13	-0.4
1,681,950	+		LRK54_RS07735	0.13	+0.4
1,681,950	+		LRK54_RS07735	0.13	-0.2
1,681,950	+		LRK54_RS07735	0.13	-0.3
1,681,950	+		LRK54_RS07735	0.13	-0.1
1,681,951	-		LRK54_RS07735	0.13	+0.1
1,681,951	-		LRK54_RS07735	0.13	-0.4
1,681,951	-		LRK54_RS07735	0.13	+1.0
1,681,951	-		LRK54_RS07735	0.13	-1.2
1,681,951	-		LRK54_RS07735	0.13	-0.1
1,681,951	-		LRK54_RS07735	0.13	-0.1
1,681,951	-		LRK54_RS07735	0.13	-0.9
1,681,951	-		LRK54_RS07735	0.13	+0.5
1,681,951	-		LRK54_RS07735	0.13	+0.7
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1,681,959	+		LRK54_RS07735	0.16	-1.8
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1,681,959	+		LRK54_RS07735	0.16	-2.4
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1,681,960	-		LRK54_RS07735	0.16	-1.1
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1,682,004	+		LRK54_RS07735	0.28	-0.7
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1,682,761	-		LRK54_RS07740	0.23	+2.1