Experiment: PYE pH6 copy A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03931 and CCNA_03932 are separated by 2 nucleotides CCNA_03932 and CCNA_03933 are separated by 30 nucleotides CCNA_03933 and CCNA_00719 are separated by 115 nucleotides
CCNA_03931: CCNA_03931 - hypothetical protein, at 773,437 to 773,730
_03931
CCNA_03932: CCNA_03932 - hypothetical protein, at 773,733 to 773,987
_03932
CCNA_03933: CCNA_03933 - hypothetical protein, at 774,018 to 774,278
_03933
CCNA_00719: CCNA_00719 - type I secretion adaptor protein hlyD, at 774,394 to 775,635
_00719
Position (kb) 774
775 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 773.030 kb on - strand at 773.076 kb on - strand at 773.080 kb on + strand at 773.094 kb on + strand at 773.095 kb on - strand at 773.101 kb on - strand at 773.102 kb on - strand at 773.102 kb on - strand at 773.102 kb on - strand at 773.118 kb on - strand at 773.120 kb on + strand at 773.126 kb on - strand at 773.126 kb on - strand at 773.128 kb on - strand at 773.161 kb on + strand at 773.184 kb on - strand at 773.192 kb on + strand at 773.193 kb on + strand at 773.193 kb on + strand at 773.202 kb on - strand at 773.202 kb on - strand at 773.213 kb on + strand at 773.213 kb on + strand at 773.221 kb on - strand at 773.221 kb on - strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.256 kb on - strand at 773.256 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.268 kb on - strand at 773.269 kb on - strand at 773.270 kb on + strand at 773.270 kb on + strand at 773.271 kb on + strand at 773.278 kb on - strand at 773.279 kb on - strand at 773.279 kb on - strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.732 kb on + strand at 773.732 kb on + strand at 773.740 kb on - strand at 773.740 kb on - strand at 773.740 kb on - strand at 773.742 kb on + strand at 773.749 kb on + strand at 773.767 kb on - strand, within CCNA_03932 at 773.791 kb on - strand, within CCNA_03932 at 773.793 kb on + strand, within CCNA_03932 at 773.793 kb on + strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.801 kb on - strand, within CCNA_03932 at 773.828 kb on + strand, within CCNA_03932 at 773.833 kb on + strand, within CCNA_03932 at 773.841 kb on - strand, within CCNA_03932 at 773.851 kb on - strand, within CCNA_03932 at 773.870 kb on - strand, within CCNA_03932 at 773.891 kb on + strand, within CCNA_03932 at 773.895 kb on - strand, within CCNA_03932 at 773.924 kb on + strand, within CCNA_03932 at 773.932 kb on - strand, within CCNA_03932 at 773.932 kb on - strand, within CCNA_03932 at 773.935 kb on + strand, within CCNA_03932 at 773.936 kb on + strand, within CCNA_03932 at 773.936 kb on + strand, within CCNA_03932 at 773.936 kb on + strand, within CCNA_03932 at 773.944 kb on - strand, within CCNA_03932 at 773.944 kb on - strand, within CCNA_03932 at 773.944 kb on - strand, within CCNA_03932 at 773.946 kb on + strand, within CCNA_03932 at 773.946 kb on + strand, within CCNA_03932 at 773.974 kb on - strand at 774.001 kb on + strand at 774.057 kb on + strand, within CCNA_03933 at 774.057 kb on + strand, within CCNA_03933 at 774.060 kb on + strand, within CCNA_03933 at 774.090 kb on - strand, within CCNA_03933 at 774.090 kb on - strand, within CCNA_03933 at 774.101 kb on + strand, within CCNA_03933 at 774.107 kb on + strand, within CCNA_03933 at 774.109 kb on - strand, within CCNA_03933 at 774.119 kb on + strand, within CCNA_03933 at 774.120 kb on - strand, within CCNA_03933 at 774.124 kb on + strand, within CCNA_03933 at 774.124 kb on + strand, within CCNA_03933 at 774.134 kb on + strand, within CCNA_03933 at 774.148 kb on + strand, within CCNA_03933 at 774.188 kb on + strand, within CCNA_03933 at 774.192 kb on + strand, within CCNA_03933 at 774.207 kb on + strand, within CCNA_03933 at 774.214 kb on + strand, within CCNA_03933 at 774.285 kb on + strand at 774.285 kb on + strand at 774.293 kb on + strand at 774.293 kb on - strand at 774.293 kb on - strand at 774.293 kb on - strand at 774.405 kb on + strand at 774.448 kb on + strand at 774.467 kb on + strand at 774.475 kb on - strand at 774.511 kb on + strand at 774.516 kb on + strand at 774.535 kb on - strand, within CCNA_00719 at 774.596 kb on - strand, within CCNA_00719 at 774.626 kb on - strand, within CCNA_00719 at 774.685 kb on + strand, within CCNA_00719 at 774.703 kb on + strand, within CCNA_00719 at 774.743 kb on + strand, within CCNA_00719 at 774.743 kb on + strand, within CCNA_00719 at 774.743 kb on + strand, within CCNA_00719 at 774.756 kb on + strand, within CCNA_00719 at 774.764 kb on - strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.838 kb on + strand, within CCNA_00719 at 774.845 kb on + strand, within CCNA_00719 at 774.845 kb on + strand, within CCNA_00719 at 774.940 kb on + strand, within CCNA_00719 at 774.940 kb on + strand, within CCNA_00719 at 774.948 kb on - strand, within CCNA_00719 at 774.975 kb on - strand, within CCNA_00719 at 774.997 kb on + strand, within CCNA_00719 at 775.005 kb on - strand, within CCNA_00719 at 775.008 kb on + strand, within CCNA_00719 at 775.009 kb on + strand, within CCNA_00719 at 775.010 kb on + strand, within CCNA_00719 at 775.017 kb on - strand, within CCNA_00719 at 775.059 kb on + strand, within CCNA_00719 at 775.117 kb on + strand, within CCNA_00719 at 775.118 kb on + strand, within CCNA_00719 at 775.150 kb on + strand, within CCNA_00719 at 775.155 kb on + strand, within CCNA_00719 at 775.155 kb on + strand, within CCNA_00719 at 775.190 kb on + strand, within CCNA_00719 at 775.200 kb on - strand, within CCNA_00719 at 775.228 kb on + strand, within CCNA_00719 at 775.228 kb on + strand, within CCNA_00719 at 775.236 kb on - strand, within CCNA_00719 at 775.240 kb on + strand, within CCNA_00719 at 775.250 kb on - strand, within CCNA_00719 at 775.261 kb on + strand, within CCNA_00719 at 775.261 kb on + strand, within CCNA_00719 at 775.266 kb on + strand, within CCNA_00719 at 775.268 kb on + strand, within CCNA_00719 at 775.276 kb on - strand, within CCNA_00719
Per-strain Table
Position Strand Gene LocusTag Fraction PYE pH6 copy A remove 773,030 - +0.8 773,076 - +1.0 773,080 + +0.9 773,094 + +0.9 773,095 - +1.1 773,101 - -0.3 773,102 - +1.4 773,102 - +1.0 773,102 - +1.1 773,118 - +0.8 773,120 + +0.5 773,126 - +0.5 773,126 - +1.6 773,128 - +1.7 773,161 + +0.5 773,184 - +0.7 773,192 + -0.6 773,193 + -2.0 773,193 + -2.4 773,202 - +0.9 773,202 - +1.1 773,213 + -1.0 773,213 + -1.1 773,221 - +1.2 773,221 - +1.5 773,248 + -0.1 773,248 + +0.9 773,248 + +0.2 773,248 + +0.0 773,249 + +0.5 773,249 + -0.7 773,249 + -0.1 773,249 + -1.0 773,249 + +0.8 773,256 - +1.9 773,256 - +1.6 773,257 - +1.1 773,257 - +1.6 773,257 - +1.5 773,257 - +1.3 773,257 - +1.5 773,257 - +1.0 773,257 - +1.5 773,257 - +1.3 773,268 - +1.5 773,269 - +1.2 773,270 + +0.1 773,270 + -1.9 773,271 + +0.5 773,278 - +1.2 773,279 - +1.4 773,279 - +1.1 773,309 - +1.4 773,309 - +1.0 773,309 - +1.3 773,732 + -2.6 773,732 + +0.2 773,740 - +1.5 773,740 - +1.6 773,740 - +0.9 773,742 + -3.7 773,749 + -3.0 773,767 - CCNA_03932 0.13 -4.1 773,791 - CCNA_03932 0.23 -0.5 773,793 + CCNA_03932 0.24 -1.8 773,793 + CCNA_03932 0.24 -1.0 773,801 - CCNA_03932 0.27 -3.1 773,801 - CCNA_03932 0.27 -3.9 773,801 - CCNA_03932 0.27 -5.0 773,801 - CCNA_03932 0.27 -2.7 773,801 - CCNA_03932 0.27 -3.3 773,828 + CCNA_03932 0.37 -2.4 773,833 + CCNA_03932 0.39 -1.8 773,841 - CCNA_03932 0.42 -3.3 773,851 - CCNA_03932 0.46 -2.9 773,870 - CCNA_03932 0.54 -4.1 773,891 + CCNA_03932 0.62 -3.3 773,895 - CCNA_03932 0.64 -1.9 773,924 + CCNA_03932 0.75 -3.3 773,932 - CCNA_03932 0.78 -2.7 773,932 - CCNA_03932 0.78 -4.5 773,935 + CCNA_03932 0.79 -4.3 773,936 + CCNA_03932 0.80 -1.4 773,936 + CCNA_03932 0.80 -3.0 773,936 + CCNA_03932 0.80 -1.7 773,944 - CCNA_03932 0.83 -2.0 773,944 - CCNA_03932 0.83 -4.4 773,944 - CCNA_03932 0.83 -3.6 773,946 + CCNA_03932 0.84 -1.5 773,946 + CCNA_03932 0.84 -1.0 773,974 - -2.4 774,001 + -2.1 774,057 + CCNA_03933 0.15 -1.8 774,057 + CCNA_03933 0.15 -1.8 774,060 + CCNA_03933 0.16 -3.7 774,090 - CCNA_03933 0.28 +3.4 774,090 - CCNA_03933 0.28 -0.1 774,101 + CCNA_03933 0.32 +0.2 774,107 + CCNA_03933 0.34 -3.7 774,109 - CCNA_03933 0.35 -0.3 774,119 + CCNA_03933 0.39 -2.5 774,120 - CCNA_03933 0.39 -0.8 774,124 + CCNA_03933 0.41 -3.2 774,124 + CCNA_03933 0.41 -4.1 774,134 + CCNA_03933 0.44 -2.1 774,148 + CCNA_03933 0.50 +1.8 774,188 + CCNA_03933 0.65 -3.3 774,192 + CCNA_03933 0.67 -3.4 774,207 + CCNA_03933 0.72 -2.3 774,214 + CCNA_03933 0.75 -2.7 774,285 + -3.7 774,285 + -2.2 774,293 + -0.2 774,293 - +0.4 774,293 - +0.6 774,293 - -0.2 774,405 + -2.5 774,448 + -1.5 774,467 + -1.2 774,475 - -2.2 774,511 + -1.0 774,516 + -1.0 774,535 - CCNA_00719 0.11 -1.2 774,596 - CCNA_00719 0.16 -0.2 774,626 - CCNA_00719 0.19 -1.9 774,685 + CCNA_00719 0.23 -1.2 774,703 + CCNA_00719 0.25 -1.2 774,743 + CCNA_00719 0.28 +0.8 774,743 + CCNA_00719 0.28 +0.0 774,743 + CCNA_00719 0.28 -1.0 774,756 + CCNA_00719 0.29 +1.4 774,764 - CCNA_00719 0.30 +0.2 774,838 + CCNA_00719 0.36 -2.7 774,838 + CCNA_00719 0.36 -1.7 774,838 + CCNA_00719 0.36 -2.3 774,838 + CCNA_00719 0.36 -0.7 774,838 + CCNA_00719 0.36 +2.5 774,838 + CCNA_00719 0.36 -0.2 774,838 + CCNA_00719 0.36 -3.3 774,845 + CCNA_00719 0.36 -3.0 774,845 + CCNA_00719 0.36 -0.6 774,940 + CCNA_00719 0.44 -0.7 774,940 + CCNA_00719 0.44 -1.4 774,948 - CCNA_00719 0.45 -1.0 774,975 - CCNA_00719 0.47 -2.4 774,997 + CCNA_00719 0.49 +1.5 775,005 - CCNA_00719 0.49 -2.5 775,008 + CCNA_00719 0.49 -2.2 775,009 + CCNA_00719 0.50 -2.3 775,010 + CCNA_00719 0.50 -0.8 775,017 - CCNA_00719 0.50 -0.0 775,059 + CCNA_00719 0.54 -1.5 775,117 + CCNA_00719 0.58 -0.9 775,118 + CCNA_00719 0.58 -1.5 775,150 + CCNA_00719 0.61 -0.6 775,155 + CCNA_00719 0.61 -1.0 775,155 + CCNA_00719 0.61 -1.9 775,190 + CCNA_00719 0.64 -0.3 775,200 - CCNA_00719 0.65 -2.2 775,228 + CCNA_00719 0.67 -3.7 775,228 + CCNA_00719 0.67 -3.0 775,236 - CCNA_00719 0.68 -0.7 775,240 + CCNA_00719 0.68 -0.4 775,250 - CCNA_00719 0.69 -2.7 775,261 + CCNA_00719 0.70 -2.9 775,261 + CCNA_00719 0.70 -1.9 775,266 + CCNA_00719 0.70 -1.4 775,268 + CCNA_00719 0.70 -1.0 775,276 - CCNA_00719 0.71 -0.5
Or see this region's nucleotide sequence