Experiment: PYE pH6 copy A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02121 and CCNA_02122 overlap by 4 nucleotides CCNA_02122 and CCNA_02123 are separated by 335 nucleotides CCNA_02123 and CCNA_02124 are separated by 144 nucleotides
CCNA_02121: CCNA_02121 - ATP-dependent helicase, at 2,271,309 to 2,273,888
_02121
CCNA_02122: CCNA_02122 - DNA repair nuclease, ligase-associated (TIGR04123) (from data) , at 2,273,885 to 2,274,592
_02122
CCNA_02123: CCNA_02123 - transposase, at 2,274,928 to 2,275,422
_02123
CCNA_02124: CCNA_02124 - hypothetical protein, at 2,275,567 to 2,276,028
_02124
Position (kb)
2273
2274
2275 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2272.906 kb on - strand, within CCNA_02121 at 2273.015 kb on + strand at 2273.018 kb on - strand, within CCNA_02121 at 2273.023 kb on - strand, within CCNA_02121 at 2273.101 kb on + strand, within CCNA_02121 at 2273.117 kb on + strand, within CCNA_02121 at 2273.160 kb on - strand, within CCNA_02121 at 2273.178 kb on - strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.252 kb on + strand, within CCNA_02121 at 2273.260 kb on - strand, within CCNA_02121 at 2273.260 kb on - strand, within CCNA_02121 at 2273.277 kb on + strand at 2273.311 kb on + strand, within CCNA_02121 at 2273.320 kb on + strand, within CCNA_02121 at 2273.333 kb on - strand, within CCNA_02121 at 2273.337 kb on + strand, within CCNA_02121 at 2273.345 kb on - strand, within CCNA_02121 at 2273.373 kb on - strand, within CCNA_02121 at 2273.425 kb on + strand, within CCNA_02121 at 2273.434 kb on + strand, within CCNA_02121 at 2273.479 kb on + strand, within CCNA_02121 at 2273.488 kb on - strand, within CCNA_02121 at 2273.496 kb on + strand, within CCNA_02121 at 2273.561 kb on + strand, within CCNA_02121 at 2273.615 kb on + strand, within CCNA_02121 at 2273.618 kb on - strand, within CCNA_02121 at 2273.623 kb on - strand, within CCNA_02121 at 2273.623 kb on - strand, within CCNA_02121 at 2273.637 kb on + strand at 2273.759 kb on + strand at 2273.759 kb on + strand at 2273.762 kb on - strand at 2273.765 kb on + strand at 2273.780 kb on - strand at 2273.974 kb on + strand, within CCNA_02122 at 2273.974 kb on + strand, within CCNA_02122 at 2273.995 kb on + strand, within CCNA_02122 at 2274.061 kb on - strand, within CCNA_02122 at 2274.089 kb on - strand, within CCNA_02122 at 2274.183 kb on + strand, within CCNA_02122 at 2274.207 kb on + strand, within CCNA_02122 at 2274.219 kb on + strand, within CCNA_02122 at 2274.229 kb on + strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.269 kb on - strand, within CCNA_02122 at 2274.270 kb on - strand, within CCNA_02122 at 2274.280 kb on - strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.375 kb on - strand, within CCNA_02122 at 2274.380 kb on + strand, within CCNA_02122 at 2274.453 kb on - strand, within CCNA_02122 at 2274.532 kb on - strand at 2274.556 kb on - strand at 2274.576 kb on - strand at 2275.412 kb on + strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE pH6 copy A remove 2,272,906 - CCNA_02121 0.62 -2.2 2,273,015 + +1.3 2,273,018 - CCNA_02121 0.66 -1.7 2,273,023 - CCNA_02121 0.66 -0.0 2,273,101 + CCNA_02121 0.69 +0.7 2,273,117 + CCNA_02121 0.70 -0.5 2,273,160 - CCNA_02121 0.72 -1.3 2,273,178 - CCNA_02121 0.72 -0.3 2,273,190 + CCNA_02121 0.73 +0.3 2,273,190 + CCNA_02121 0.73 -0.9 2,273,190 + CCNA_02121 0.73 -0.7 2,273,190 + CCNA_02121 0.73 +0.5 2,273,252 + CCNA_02121 0.75 +1.1 2,273,260 - CCNA_02121 0.76 -1.8 2,273,260 - CCNA_02121 0.76 -2.7 2,273,277 + +2.3 2,273,311 + CCNA_02121 0.78 -2.8 2,273,320 + CCNA_02121 0.78 +1.7 2,273,333 - CCNA_02121 0.78 -2.4 2,273,337 + CCNA_02121 0.79 -1.5 2,273,345 - CCNA_02121 0.79 -1.5 2,273,373 - CCNA_02121 0.80 -1.7 2,273,425 + CCNA_02121 0.82 +0.1 2,273,434 + CCNA_02121 0.82 +2.0 2,273,479 + CCNA_02121 0.84 -0.8 2,273,488 - CCNA_02121 0.84 +1.3 2,273,496 + CCNA_02121 0.85 -1.4 2,273,561 + CCNA_02121 0.87 -0.3 2,273,615 + CCNA_02121 0.89 +0.7 2,273,618 - CCNA_02121 0.89 -0.1 2,273,623 - CCNA_02121 0.90 +1.9 2,273,623 - CCNA_02121 0.90 -0.8 2,273,637 + -0.5 2,273,759 + -0.8 2,273,759 + -0.3 2,273,762 - -1.1 2,273,765 + +0.2 2,273,780 - -1.5 2,273,974 + CCNA_02122 0.13 -2.2 2,273,974 + CCNA_02122 0.13 -1.0 2,273,995 + CCNA_02122 0.16 -1.3 2,274,061 - CCNA_02122 0.25 -0.7 2,274,089 - CCNA_02122 0.29 +2.1 2,274,183 + CCNA_02122 0.42 -0.3 2,274,207 + CCNA_02122 0.45 -0.6 2,274,219 + CCNA_02122 0.47 -0.1 2,274,229 + CCNA_02122 0.49 +0.4 2,274,237 - CCNA_02122 0.50 -2.0 2,274,237 - CCNA_02122 0.50 -2.3 2,274,269 - CCNA_02122 0.54 -2.1 2,274,270 - CCNA_02122 0.54 -0.7 2,274,280 - CCNA_02122 0.56 -2.0 2,274,367 + CCNA_02122 0.68 -0.2 2,274,367 + CCNA_02122 0.68 -0.3 2,274,375 - CCNA_02122 0.69 +0.0 2,274,380 + CCNA_02122 0.70 -0.4 2,274,453 - CCNA_02122 0.80 -2.1 2,274,532 - -0.6 2,274,556 - -0.7 2,274,576 - +0.5 2,275,412 + +1.3 2,275,463 - +0.3 2,275,463 - +0.2 2,275,463 - +0.6 2,275,463 - +0.2 2,275,463 - -0.3 2,275,463 - +0.3 2,275,463 - +0.8
Or see this region's nucleotide sequence