Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00801

Experiment: PYE pH6 copy A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00800 and CCNA_00801 are separated by 14 nucleotidesCCNA_00801 and CCNA_00802 are separated by 18 nucleotidesCCNA_00802 and CCNA_00803 are separated by 158 nucleotidesCCNA_00803 and CCNA_00804 are separated by 64 nucleotides CCNA_00800: CCNA_00800 - cytochrome bd-type quinol oxidase, subunit 1 cydA, at 864,829 to 866,391 _00800 CCNA_00801: CCNA_00801 - cytochrome bd-type quinol oxidase, subunit 2 cydB, at 866,406 to 867,557 _00801 CCNA_00802: CCNA_00802 - cyd operon protein YbgT, at 867,576 to 867,695 _00802 CCNA_00803: CCNA_00803 - chemotaxis protein cheW, at 867,854 to 868,309 _00803 CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859 _00804 Position (kb) 866 867 868Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 865.426 kb on + strand, within CCNA_00800at 865.520 kb on + strand, within CCNA_00800at 865.532 kb on + strand, within CCNA_00800at 865.537 kb on + strand, within CCNA_00800at 865.545 kb on - strand, within CCNA_00800at 865.559 kb on - strand, within CCNA_00800at 865.564 kb on - strand, within CCNA_00800at 865.595 kb on + strand, within CCNA_00800at 865.614 kb on + strand, within CCNA_00800at 865.668 kb on + strand, within CCNA_00800at 865.702 kb on + strand, within CCNA_00800at 865.751 kb on + strand, within CCNA_00800at 865.751 kb on + strand, within CCNA_00800at 865.859 kb on + strand, within CCNA_00800at 865.867 kb on - strand, within CCNA_00800at 865.892 kb on - strand, within CCNA_00800at 865.894 kb on - strand, within CCNA_00800at 865.929 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.934 kb on + strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.942 kb on - strand, within CCNA_00800at 865.989 kb on + strand, within CCNA_00800at 865.997 kb on - strand, within CCNA_00800at 865.997 kb on - strand, within CCNA_00800at 865.997 kb on - strand, within CCNA_00800at 866.044 kb on + strand, within CCNA_00800at 866.090 kb on - strand, within CCNA_00800at 866.119 kb on + strand, within CCNA_00800at 866.124 kb on + strand, within CCNA_00800at 866.183 kb on - strand, within CCNA_00800at 866.193 kb on - strand, within CCNA_00800at 866.265 kb on - strandat 866.266 kb on + strandat 866.268 kb on + strandat 866.283 kb on + strandat 866.291 kb on - strandat 866.308 kb on - strandat 866.337 kb on - strandat 866.343 kb on - strandat 866.352 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.386 kb on + strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.394 kb on - strandat 866.446 kb on + strandat 866.484 kb on - strandat 866.517 kb on + strandat 866.525 kb on - strand, within CCNA_00801at 866.540 kb on - strand, within CCNA_00801at 866.592 kb on + strand, within CCNA_00801at 866.602 kb on + strand, within CCNA_00801at 866.602 kb on + strand, within CCNA_00801at 866.610 kb on - strand, within CCNA_00801at 866.634 kb on + strand, within CCNA_00801at 866.645 kb on + strand, within CCNA_00801at 866.653 kb on - strand, within CCNA_00801at 866.755 kb on - strand, within CCNA_00801at 866.818 kb on + strand, within CCNA_00801at 866.818 kb on + strandat 866.818 kb on - strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.828 kb on + strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.835 kb on + strand, within CCNA_00801at 866.880 kb on + strand, within CCNA_00801at 866.909 kb on - strand, within CCNA_00801at 866.927 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.987 kb on + strand, within CCNA_00801at 866.993 kb on + strand, within CCNA_00801at 866.995 kb on - strand, within CCNA_00801at 867.039 kb on + strand, within CCNA_00801at 867.047 kb on - strand, within CCNA_00801at 867.047 kb on - strand, within CCNA_00801at 867.057 kb on - strand, within CCNA_00801at 867.081 kb on - strand, within CCNA_00801at 867.119 kb on + strand, within CCNA_00801at 867.122 kb on - strand, within CCNA_00801at 867.122 kb on - strand, within CCNA_00801at 867.228 kb on + strand, within CCNA_00801at 867.236 kb on - strand, within CCNA_00801at 867.257 kb on - strand, within CCNA_00801at 867.259 kb on + strand, within CCNA_00801at 867.259 kb on + strand, within CCNA_00801at 867.267 kb on - strand, within CCNA_00801at 867.334 kb on + strand, within CCNA_00801at 867.363 kb on + strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.399 kb on + strand, within CCNA_00801at 867.399 kb on - strand, within CCNA_00801at 867.476 kb on + strandat 867.476 kb on + strandat 867.476 kb on + strandat 867.484 kb on - strandat 867.499 kb on - strandat 867.512 kb on + strandat 867.531 kb on - strandat 867.531 kb on - strandat 867.541 kb on + strandat 867.542 kb on - strandat 867.549 kb on - strandat 867.549 kb on - strandat 867.549 kb on - strandat 867.551 kb on + strandat 867.551 kb on + strandat 867.559 kb on - strandat 867.565 kb on - strandat 867.576 kb on + strandat 867.609 kb on - strand, within CCNA_00802at 867.629 kb on + strand, within CCNA_00802at 867.637 kb on - strand, within CCNA_00802at 867.649 kb on + strand, within CCNA_00802at 867.649 kb on + strand, within CCNA_00802at 867.657 kb on - strand, within CCNA_00802at 867.678 kb on + strand, within CCNA_00802at 867.678 kb on + strand, within CCNA_00802at 867.678 kb on + strand, within CCNA_00802at 867.686 kb on - strandat 867.686 kb on - strandat 867.696 kb on + strandat 867.719 kb on - strandat 867.745 kb on + strandat 867.807 kb on - strandat 867.860 kb on + strandat 867.876 kb on - strandat 867.879 kb on + strandat 867.919 kb on - strand, within CCNA_00803at 867.924 kb on - strand, within CCNA_00803at 867.928 kb on + strand, within CCNA_00803at 867.954 kb on + strand, within CCNA_00803at 867.954 kb on + strand, within CCNA_00803at 867.984 kb on + strand, within CCNA_00803at 868.012 kb on - strand, within CCNA_00803at 868.024 kb on + strand, within CCNA_00803at 868.071 kb on - strand, within CCNA_00803at 868.076 kb on + strand, within CCNA_00803at 868.084 kb on - strand, within CCNA_00803at 868.100 kb on + strand, within CCNA_00803at 868.143 kb on - strand, within CCNA_00803at 868.163 kb on - strandat 868.176 kb on + strand, within CCNA_00803at 868.188 kb on + strand, within CCNA_00803at 868.226 kb on - strand, within CCNA_00803at 868.269 kb on + strandat 868.286 kb on + strandat 868.371 kb on + strandat 868.414 kb on - strandat 868.416 kb on + strandat 868.514 kb on - strand, within CCNA_00804

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE pH6 copy A
remove
865,426 + CCNA_00800 0.38 -1.0
865,520 + CCNA_00800 0.44 -2.0
865,532 + CCNA_00800 0.45 -1.7
865,537 + CCNA_00800 0.45 -2.9
865,545 - CCNA_00800 0.46 -2.7
865,559 - CCNA_00800 0.47 -2.3
865,564 - CCNA_00800 0.47 -2.1
865,595 + CCNA_00800 0.49 -1.2
865,614 + CCNA_00800 0.50 -2.6
865,668 + CCNA_00800 0.54 -2.3
865,702 + CCNA_00800 0.56 -2.3
865,751 + CCNA_00800 0.59 -1.2
865,751 + CCNA_00800 0.59 -1.7
865,859 + CCNA_00800 0.66 -2.2
865,867 - CCNA_00800 0.66 -2.8
865,892 - CCNA_00800 0.68 -2.2
865,894 - CCNA_00800 0.68 -1.4
865,929 + CCNA_00800 0.70 +0.0
865,934 + CCNA_00800 0.71 +0.6
865,934 + CCNA_00800 0.71 -2.0
865,934 + CCNA_00800 0.71 -2.6
865,934 + CCNA_00800 0.71 -1.8
865,934 + CCNA_00800 0.71 -2.3
865,934 + CCNA_00800 0.71 -1.7
865,934 + CCNA_00800 0.71 -2.4
865,934 + CCNA_00800 0.71 -2.8
865,934 + CCNA_00800 0.71 -1.8
865,934 + CCNA_00800 0.71 -2.3
865,934 + CCNA_00800 0.71 -2.7
865,934 + CCNA_00800 0.71 -2.4
865,942 - CCNA_00800 0.71 -3.0
865,942 - CCNA_00800 0.71 -0.7
865,942 - CCNA_00800 0.71 -3.1
865,942 - CCNA_00800 0.71 -1.7
865,942 - CCNA_00800 0.71 -1.8
865,942 - CCNA_00800 0.71 -0.4
865,942 - CCNA_00800 0.71 -2.1
865,942 - CCNA_00800 0.71 -3.1
865,942 - CCNA_00800 0.71 -3.3
865,942 - CCNA_00800 0.71 -2.4
865,942 - CCNA_00800 0.71 -3.4
865,989 + CCNA_00800 0.74 -3.6
865,997 - CCNA_00800 0.75 -1.5
865,997 - CCNA_00800 0.75 -3.0
865,997 - CCNA_00800 0.75 -2.1
866,044 + CCNA_00800 0.78 -0.4
866,090 - CCNA_00800 0.81 -0.7
866,119 + CCNA_00800 0.83 -3.3
866,124 + CCNA_00800 0.83 -2.5
866,183 - CCNA_00800 0.87 -1.2
866,193 - CCNA_00800 0.87 -2.0
866,265 - -2.8
866,266 + -2.1
866,268 + -2.9
866,283 + -1.5
866,291 - -1.5
866,308 - -2.0
866,337 - -2.8
866,343 - -2.0
866,352 + +1.1
866,386 + +0.7
866,386 + +0.7
866,386 + +1.3
866,386 + +1.0
866,386 + +1.0
866,386 + +1.0
866,386 + +0.5
866,386 + -0.1
866,386 + +1.2
866,394 - -0.8
866,394 - +2.2
866,394 - -2.1
866,394 - -1.6
866,394 - -0.4
866,394 - -1.0
866,394 - +0.2
866,446 + +0.0
866,484 - -2.5
866,517 + -3.3
866,525 - CCNA_00801 0.10 -0.4
866,540 - CCNA_00801 0.12 -2.9
866,592 + CCNA_00801 0.16 -2.2
866,602 + CCNA_00801 0.17 -1.0
866,602 + CCNA_00801 0.17 -0.4
866,610 - CCNA_00801 0.18 -1.8
866,634 + CCNA_00801 0.20 -3.9
866,645 + CCNA_00801 0.21 -1.2
866,653 - CCNA_00801 0.21 -3.4
866,755 - CCNA_00801 0.30 -2.2
866,818 + CCNA_00801 0.36 -1.2
866,818 + +0.6
866,818 - CCNA_00801 0.36 -2.5
866,823 + CCNA_00801 0.36 -1.7
866,823 + CCNA_00801 0.36 -0.7
866,823 + CCNA_00801 0.36 -1.0
866,823 + CCNA_00801 0.36 -4.1
866,823 + CCNA_00801 0.36 -2.2
866,823 + CCNA_00801 0.36 -2.4
866,828 + CCNA_00801 0.37 -1.8
866,831 - CCNA_00801 0.37 -1.7
866,831 - CCNA_00801 0.37 -2.2
866,831 - CCNA_00801 0.37 -2.6
866,831 - CCNA_00801 0.37 -0.7
866,831 - CCNA_00801 0.37 -2.6
866,835 + CCNA_00801 0.37 -2.3
866,880 + CCNA_00801 0.41 -2.2
866,909 - CCNA_00801 0.44 -1.2
866,927 + CCNA_00801 0.45 -1.2
866,970 + CCNA_00801 0.49 -2.0
866,970 + CCNA_00801 0.49 -1.7
866,970 + CCNA_00801 0.49 -2.4
866,978 - CCNA_00801 0.50 -4.0
866,978 - CCNA_00801 0.50 -1.5
866,978 - CCNA_00801 0.50 -2.3
866,987 + CCNA_00801 0.50 -1.7
866,993 + CCNA_00801 0.51 -1.7
866,995 - CCNA_00801 0.51 -3.3
867,039 + CCNA_00801 0.55 -2.0
867,047 - CCNA_00801 0.56 -1.8
867,047 - CCNA_00801 0.56 -0.7
867,057 - CCNA_00801 0.57 -2.3
867,081 - CCNA_00801 0.59 -2.0
867,119 + CCNA_00801 0.62 -2.1
867,122 - CCNA_00801 0.62 -1.5
867,122 - CCNA_00801 0.62 -2.6
867,228 + CCNA_00801 0.71 -2.1
867,236 - CCNA_00801 0.72 -1.0
867,257 - CCNA_00801 0.74 -3.0
867,259 + CCNA_00801 0.74 -2.5
867,259 + CCNA_00801 0.74 -2.1
867,267 - CCNA_00801 0.75 +0.0
867,334 + CCNA_00801 0.81 -1.7
867,363 + CCNA_00801 0.83 -4.1
867,381 - CCNA_00801 0.85 -2.7
867,381 - CCNA_00801 0.85 +0.6
867,381 - CCNA_00801 0.85 -2.0
867,399 + CCNA_00801 0.86 -2.2
867,399 - CCNA_00801 0.86 -1.7
867,476 + -3.4
867,476 + -3.3
867,476 + -3.6
867,484 - -2.0
867,499 - -2.1
867,512 + +0.6
867,531 - -0.7
867,531 - -1.8
867,541 + +0.5
867,542 - -1.8
867,549 - -1.8
867,549 - -2.6
867,549 - -2.2
867,551 + +1.5
867,551 + +1.1
867,559 - -0.2
867,565 - -2.8
867,576 + -0.4
867,609 - CCNA_00802 0.28 -2.3
867,629 + CCNA_00802 0.44 -2.4
867,637 - CCNA_00802 0.51 -2.5
867,649 + CCNA_00802 0.61 +1.6
867,649 + CCNA_00802 0.61 +1.0
867,657 - CCNA_00802 0.68 -1.6
867,678 + CCNA_00802 0.85 +1.2
867,678 + CCNA_00802 0.85 +2.0
867,678 + CCNA_00802 0.85 +0.5
867,686 - -2.7
867,686 - +1.6
867,696 + +1.5
867,719 - -0.7
867,745 + +0.1
867,807 - -0.2
867,860 + +1.1
867,876 - -2.0
867,879 + +1.0
867,919 - CCNA_00803 0.14 +0.0
867,924 - CCNA_00803 0.15 -0.5
867,928 + CCNA_00803 0.16 +1.7
867,954 + CCNA_00803 0.22 +1.6
867,954 + CCNA_00803 0.22 +1.3
867,984 + CCNA_00803 0.29 +1.5
868,012 - CCNA_00803 0.35 +0.0
868,024 + CCNA_00803 0.37 +1.2
868,071 - CCNA_00803 0.48 +0.9
868,076 + CCNA_00803 0.49 +1.0
868,084 - CCNA_00803 0.50 -0.5
868,100 + CCNA_00803 0.54 +1.8
868,143 - CCNA_00803 0.63 -0.4
868,163 - +2.6
868,176 + CCNA_00803 0.71 +0.8
868,188 + CCNA_00803 0.73 +1.8
868,226 - CCNA_00803 0.82 -0.6
868,269 + +1.3
868,286 + +1.6
868,371 + +0.9
868,414 - +0.8
868,416 + +0.7
868,514 - CCNA_00804 0.29 +1.4

Or see this region's nucleotide sequence