Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00719

Experiment: PYE pH6 copy A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03931 and CCNA_03932 are separated by 2 nucleotidesCCNA_03932 and CCNA_03933 are separated by 30 nucleotidesCCNA_03933 and CCNA_00719 are separated by 115 nucleotidesCCNA_00719 and CCNA_00720 overlap by 40 nucleotides CCNA_03931: CCNA_03931 - hypothetical protein, at 773,437 to 773,730 _03931 CCNA_03932: CCNA_03932 - hypothetical protein, at 773,733 to 773,987 _03932 CCNA_03933: CCNA_03933 - hypothetical protein, at 774,018 to 774,278 _03933 CCNA_00719: CCNA_00719 - type I secretion adaptor protein hlyD, at 774,394 to 775,635 _00719 CCNA_00720: CCNA_00720 - type I protein secretion ATP-binding protein/type I protein secretion transmembrane subunit/type I secretion processing peptidase, at 775,596 to 777,776 _00720 Position (kb) 774 775 776Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 773.732 kb on + strandat 773.732 kb on + strandat 773.740 kb on - strandat 773.740 kb on - strandat 773.740 kb on - strandat 773.742 kb on + strandat 773.749 kb on + strandat 773.767 kb on - strand, within CCNA_03932at 773.791 kb on - strand, within CCNA_03932at 773.793 kb on + strand, within CCNA_03932at 773.793 kb on + strand, within CCNA_03932at 773.801 kb on - strand, within CCNA_03932at 773.801 kb on - strand, within CCNA_03932at 773.801 kb on - strand, within CCNA_03932at 773.801 kb on - strand, within CCNA_03932at 773.801 kb on - strand, within CCNA_03932at 773.828 kb on + strand, within CCNA_03932at 773.833 kb on + strand, within CCNA_03932at 773.841 kb on - strand, within CCNA_03932at 773.851 kb on - strand, within CCNA_03932at 773.870 kb on - strand, within CCNA_03932at 773.891 kb on + strand, within CCNA_03932at 773.895 kb on - strand, within CCNA_03932at 773.924 kb on + strand, within CCNA_03932at 773.932 kb on - strand, within CCNA_03932at 773.932 kb on - strand, within CCNA_03932at 773.935 kb on + strand, within CCNA_03932at 773.936 kb on + strand, within CCNA_03932at 773.936 kb on + strand, within CCNA_03932at 773.936 kb on + strand, within CCNA_03932at 773.944 kb on - strand, within CCNA_03932at 773.944 kb on - strand, within CCNA_03932at 773.944 kb on - strand, within CCNA_03932at 773.946 kb on + strand, within CCNA_03932at 773.946 kb on + strand, within CCNA_03932at 773.974 kb on - strandat 774.001 kb on + strandat 774.057 kb on + strand, within CCNA_03933at 774.057 kb on + strand, within CCNA_03933at 774.060 kb on + strand, within CCNA_03933at 774.090 kb on - strand, within CCNA_03933at 774.090 kb on - strand, within CCNA_03933at 774.101 kb on + strand, within CCNA_03933at 774.107 kb on + strand, within CCNA_03933at 774.109 kb on - strand, within CCNA_03933at 774.119 kb on + strand, within CCNA_03933at 774.120 kb on - strand, within CCNA_03933at 774.124 kb on + strand, within CCNA_03933at 774.124 kb on + strand, within CCNA_03933at 774.134 kb on + strand, within CCNA_03933at 774.148 kb on + strand, within CCNA_03933at 774.188 kb on + strand, within CCNA_03933at 774.192 kb on + strand, within CCNA_03933at 774.207 kb on + strand, within CCNA_03933at 774.214 kb on + strand, within CCNA_03933at 774.285 kb on + strandat 774.285 kb on + strandat 774.293 kb on + strandat 774.293 kb on - strandat 774.293 kb on - strandat 774.293 kb on - strandat 774.405 kb on + strandat 774.448 kb on + strandat 774.467 kb on + strandat 774.475 kb on - strandat 774.511 kb on + strandat 774.516 kb on + strandat 774.535 kb on - strand, within CCNA_00719at 774.596 kb on - strand, within CCNA_00719at 774.626 kb on - strand, within CCNA_00719at 774.685 kb on + strand, within CCNA_00719at 774.703 kb on + strand, within CCNA_00719at 774.743 kb on + strand, within CCNA_00719at 774.743 kb on + strand, within CCNA_00719at 774.743 kb on + strand, within CCNA_00719at 774.756 kb on + strand, within CCNA_00719at 774.764 kb on - strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.845 kb on + strand, within CCNA_00719at 774.845 kb on + strand, within CCNA_00719at 774.940 kb on + strand, within CCNA_00719at 774.940 kb on + strand, within CCNA_00719at 774.948 kb on - strand, within CCNA_00719at 774.975 kb on - strand, within CCNA_00719at 774.997 kb on + strand, within CCNA_00719at 775.005 kb on - strand, within CCNA_00719at 775.008 kb on + strand, within CCNA_00719at 775.009 kb on + strand, within CCNA_00719at 775.010 kb on + strand, within CCNA_00719at 775.017 kb on - strand, within CCNA_00719at 775.059 kb on + strand, within CCNA_00719at 775.117 kb on + strand, within CCNA_00719at 775.118 kb on + strand, within CCNA_00719at 775.150 kb on + strand, within CCNA_00719at 775.155 kb on + strand, within CCNA_00719at 775.155 kb on + strand, within CCNA_00719at 775.190 kb on + strand, within CCNA_00719at 775.200 kb on - strand, within CCNA_00719at 775.228 kb on + strand, within CCNA_00719at 775.228 kb on + strand, within CCNA_00719at 775.236 kb on - strand, within CCNA_00719at 775.240 kb on + strand, within CCNA_00719at 775.250 kb on - strand, within CCNA_00719at 775.261 kb on + strand, within CCNA_00719at 775.261 kb on + strand, within CCNA_00719at 775.266 kb on + strand, within CCNA_00719at 775.268 kb on + strand, within CCNA_00719at 775.276 kb on - strand, within CCNA_00719at 775.296 kb on + strand, within CCNA_00719at 775.296 kb on + strand, within CCNA_00719at 775.296 kb on + strand, within CCNA_00719at 775.304 kb on - strand, within CCNA_00719at 775.304 kb on - strand, within CCNA_00719at 775.304 kb on - strand, within CCNA_00719at 775.356 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.433 kb on + strand, within CCNA_00719at 775.441 kb on - strand, within CCNA_00719at 775.441 kb on - strand, within CCNA_00719at 775.448 kb on + strand, within CCNA_00719at 775.476 kb on + strand, within CCNA_00719at 775.492 kb on + strand, within CCNA_00719at 775.505 kb on - strand, within CCNA_00719at 775.522 kb on + strandat 775.545 kb on + strandat 775.566 kb on + strandat 775.598 kb on - strandat 775.637 kb on - strandat 775.642 kb on + strandat 775.650 kb on + strandat 775.652 kb on + strandat 775.694 kb on + strandat 775.727 kb on + strandat 775.761 kb on + strandat 775.791 kb on - strandat 775.797 kb on + strandat 775.809 kb on + strandat 775.814 kb on + strand, within CCNA_00720at 775.819 kb on + strand, within CCNA_00720at 775.822 kb on - strand, within CCNA_00720at 775.839 kb on + strand, within CCNA_00720at 775.839 kb on + strand, within CCNA_00720at 775.839 kb on + strand, within CCNA_00720at 775.847 kb on - strand, within CCNA_00720at 775.886 kb on + strand, within CCNA_00720at 775.913 kb on + strand, within CCNA_00720at 775.916 kb on - strand, within CCNA_00720at 775.945 kb on + strand, within CCNA_00720at 775.946 kb on - strand, within CCNA_00720at 775.950 kb on + strand, within CCNA_00720at 775.958 kb on - strand, within CCNA_00720at 775.997 kb on + strand, within CCNA_00720at 775.997 kb on + strand, within CCNA_00720at 775.997 kb on + strand, within CCNA_00720at 775.999 kb on + strand, within CCNA_00720at 775.999 kb on + strand, within CCNA_00720at 776.007 kb on - strand, within CCNA_00720at 776.025 kb on + strand, within CCNA_00720at 776.057 kb on + strand, within CCNA_00720at 776.102 kb on + strand, within CCNA_00720at 776.107 kb on + strand, within CCNA_00720at 776.107 kb on + strand, within CCNA_00720at 776.152 kb on - strand, within CCNA_00720at 776.160 kb on - strand, within CCNA_00720at 776.162 kb on + strand, within CCNA_00720at 776.181 kb on + strand, within CCNA_00720at 776.224 kb on + strand, within CCNA_00720at 776.231 kb on + strand, within CCNA_00720at 776.241 kb on + strand, within CCNA_00720at 776.252 kb on + strand, within CCNA_00720at 776.259 kb on + strand, within CCNA_00720at 776.259 kb on + strand, within CCNA_00720at 776.267 kb on - strand, within CCNA_00720at 776.274 kb on + strand, within CCNA_00720at 776.321 kb on - strand, within CCNA_00720at 776.407 kb on + strand, within CCNA_00720at 776.472 kb on + strand, within CCNA_00720at 776.543 kb on + strand, within CCNA_00720at 776.588 kb on + strand, within CCNA_00720at 776.593 kb on + strand, within CCNA_00720at 776.615 kb on + strand, within CCNA_00720

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE pH6 copy A
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773,732 + -2.6
773,732 + +0.2
773,740 - +1.5
773,740 - +1.6
773,740 - +0.9
773,742 + -3.7
773,749 + -3.0
773,767 - CCNA_03932 0.13 -4.1
773,791 - CCNA_03932 0.23 -0.5
773,793 + CCNA_03932 0.24 -1.8
773,793 + CCNA_03932 0.24 -1.0
773,801 - CCNA_03932 0.27 -3.1
773,801 - CCNA_03932 0.27 -3.9
773,801 - CCNA_03932 0.27 -5.0
773,801 - CCNA_03932 0.27 -2.7
773,801 - CCNA_03932 0.27 -3.3
773,828 + CCNA_03932 0.37 -2.4
773,833 + CCNA_03932 0.39 -1.8
773,841 - CCNA_03932 0.42 -3.3
773,851 - CCNA_03932 0.46 -2.9
773,870 - CCNA_03932 0.54 -4.1
773,891 + CCNA_03932 0.62 -3.3
773,895 - CCNA_03932 0.64 -1.9
773,924 + CCNA_03932 0.75 -3.3
773,932 - CCNA_03932 0.78 -2.7
773,932 - CCNA_03932 0.78 -4.5
773,935 + CCNA_03932 0.79 -4.3
773,936 + CCNA_03932 0.80 -1.4
773,936 + CCNA_03932 0.80 -3.0
773,936 + CCNA_03932 0.80 -1.7
773,944 - CCNA_03932 0.83 -2.0
773,944 - CCNA_03932 0.83 -4.4
773,944 - CCNA_03932 0.83 -3.6
773,946 + CCNA_03932 0.84 -1.5
773,946 + CCNA_03932 0.84 -1.0
773,974 - -2.4
774,001 + -2.1
774,057 + CCNA_03933 0.15 -1.8
774,057 + CCNA_03933 0.15 -1.8
774,060 + CCNA_03933 0.16 -3.7
774,090 - CCNA_03933 0.28 +3.4
774,090 - CCNA_03933 0.28 -0.1
774,101 + CCNA_03933 0.32 +0.2
774,107 + CCNA_03933 0.34 -3.7
774,109 - CCNA_03933 0.35 -0.3
774,119 + CCNA_03933 0.39 -2.5
774,120 - CCNA_03933 0.39 -0.8
774,124 + CCNA_03933 0.41 -3.2
774,124 + CCNA_03933 0.41 -4.1
774,134 + CCNA_03933 0.44 -2.1
774,148 + CCNA_03933 0.50 +1.8
774,188 + CCNA_03933 0.65 -3.3
774,192 + CCNA_03933 0.67 -3.4
774,207 + CCNA_03933 0.72 -2.3
774,214 + CCNA_03933 0.75 -2.7
774,285 + -3.7
774,285 + -2.2
774,293 + -0.2
774,293 - +0.4
774,293 - +0.6
774,293 - -0.2
774,405 + -2.5
774,448 + -1.5
774,467 + -1.2
774,475 - -2.2
774,511 + -1.0
774,516 + -1.0
774,535 - CCNA_00719 0.11 -1.2
774,596 - CCNA_00719 0.16 -0.2
774,626 - CCNA_00719 0.19 -1.9
774,685 + CCNA_00719 0.23 -1.2
774,703 + CCNA_00719 0.25 -1.2
774,743 + CCNA_00719 0.28 +0.8
774,743 + CCNA_00719 0.28 +0.0
774,743 + CCNA_00719 0.28 -1.0
774,756 + CCNA_00719 0.29 +1.4
774,764 - CCNA_00719 0.30 +0.2
774,838 + CCNA_00719 0.36 -2.7
774,838 + CCNA_00719 0.36 -1.7
774,838 + CCNA_00719 0.36 -2.3
774,838 + CCNA_00719 0.36 -0.7
774,838 + CCNA_00719 0.36 +2.5
774,838 + CCNA_00719 0.36 -0.2
774,838 + CCNA_00719 0.36 -3.3
774,845 + CCNA_00719 0.36 -3.0
774,845 + CCNA_00719 0.36 -0.6
774,940 + CCNA_00719 0.44 -0.7
774,940 + CCNA_00719 0.44 -1.4
774,948 - CCNA_00719 0.45 -1.0
774,975 - CCNA_00719 0.47 -2.4
774,997 + CCNA_00719 0.49 +1.5
775,005 - CCNA_00719 0.49 -2.5
775,008 + CCNA_00719 0.49 -2.2
775,009 + CCNA_00719 0.50 -2.3
775,010 + CCNA_00719 0.50 -0.8
775,017 - CCNA_00719 0.50 -0.0
775,059 + CCNA_00719 0.54 -1.5
775,117 + CCNA_00719 0.58 -0.9
775,118 + CCNA_00719 0.58 -1.5
775,150 + CCNA_00719 0.61 -0.6
775,155 + CCNA_00719 0.61 -1.0
775,155 + CCNA_00719 0.61 -1.9
775,190 + CCNA_00719 0.64 -0.3
775,200 - CCNA_00719 0.65 -2.2
775,228 + CCNA_00719 0.67 -3.7
775,228 + CCNA_00719 0.67 -3.0
775,236 - CCNA_00719 0.68 -0.7
775,240 + CCNA_00719 0.68 -0.4
775,250 - CCNA_00719 0.69 -2.7
775,261 + CCNA_00719 0.70 -2.9
775,261 + CCNA_00719 0.70 -1.9
775,266 + CCNA_00719 0.70 -1.4
775,268 + CCNA_00719 0.70 -1.0
775,276 - CCNA_00719 0.71 -0.5
775,296 + CCNA_00719 0.73 -0.5
775,296 + CCNA_00719 0.73 -2.1
775,296 + CCNA_00719 0.73 -0.0
775,304 - CCNA_00719 0.73 -1.2
775,304 - CCNA_00719 0.73 -1.2
775,304 - CCNA_00719 0.73 -0.5
775,356 + CCNA_00719 0.77 -2.1
775,423 + CCNA_00719 0.83 +0.6
775,423 + CCNA_00719 0.83 -1.5
775,423 + CCNA_00719 0.83 -3.2
775,423 + CCNA_00719 0.83 -2.5
775,423 + CCNA_00719 0.83 -1.7
775,423 + CCNA_00719 0.83 -2.7
775,423 + CCNA_00719 0.83 -0.2
775,423 + CCNA_00719 0.83 -0.0
775,423 + CCNA_00719 0.83 -0.2
775,431 - CCNA_00719 0.83 +0.2
775,431 - CCNA_00719 0.83 -3.0
775,431 - CCNA_00719 0.83 -1.4
775,431 - CCNA_00719 0.83 -1.7
775,431 - CCNA_00719 0.83 -0.8
775,431 - CCNA_00719 0.83 -3.0
775,431 - CCNA_00719 0.83 -1.7
775,433 + CCNA_00719 0.84 -2.3
775,441 - CCNA_00719 0.84 -0.8
775,441 - CCNA_00719 0.84 -2.1
775,448 + CCNA_00719 0.85 +0.2
775,476 + CCNA_00719 0.87 -0.8
775,492 + CCNA_00719 0.88 +0.8
775,505 - CCNA_00719 0.89 -1.4
775,522 + -2.6
775,545 + -2.1
775,566 + -0.8
775,598 - -2.3
775,637 - -0.5
775,642 + -0.2
775,650 + -1.9
775,652 + +1.1
775,694 + -0.2
775,727 + -0.4
775,761 + -1.5
775,791 - -1.0
775,797 + +0.8
775,809 + -2.0
775,814 + CCNA_00720 0.10 -2.4
775,819 + CCNA_00720 0.10 -3.3
775,822 - CCNA_00720 0.10 -2.8
775,839 + CCNA_00720 0.11 -0.5
775,839 + CCNA_00720 0.11 -0.7
775,839 + CCNA_00720 0.11 -0.8
775,847 - CCNA_00720 0.12 -1.5
775,886 + CCNA_00720 0.13 -1.2
775,913 + CCNA_00720 0.15 +0.8
775,916 - CCNA_00720 0.15 +0.8
775,945 + CCNA_00720 0.16 -0.5
775,946 - CCNA_00720 0.16 -1.5
775,950 + CCNA_00720 0.16 +1.8
775,958 - CCNA_00720 0.17 -2.9
775,997 + CCNA_00720 0.18 -1.4
775,997 + CCNA_00720 0.18 -0.2
775,997 + CCNA_00720 0.18 -0.8
775,999 + CCNA_00720 0.18 +0.9
775,999 + CCNA_00720 0.18 -3.1
776,007 - CCNA_00720 0.19 -3.1
776,025 + CCNA_00720 0.20 -1.8
776,057 + CCNA_00720 0.21 -1.8
776,102 + CCNA_00720 0.23 +1.5
776,107 + CCNA_00720 0.23 -0.9
776,107 + CCNA_00720 0.23 -2.3
776,152 - CCNA_00720 0.25 -1.8
776,160 - CCNA_00720 0.26 -1.9
776,162 + CCNA_00720 0.26 -1.8
776,181 + CCNA_00720 0.27 +0.2
776,224 + CCNA_00720 0.29 -0.8
776,231 + CCNA_00720 0.29 -1.7
776,241 + CCNA_00720 0.30 -2.0
776,252 + CCNA_00720 0.30 -0.0
776,259 + CCNA_00720 0.30 +1.8
776,259 + CCNA_00720 0.30 -1.8
776,267 - CCNA_00720 0.31 -1.9
776,274 + CCNA_00720 0.31 -2.0
776,321 - CCNA_00720 0.33 -2.9
776,407 + CCNA_00720 0.37 -1.5
776,472 + CCNA_00720 0.40 -1.7
776,543 + CCNA_00720 0.43 +1.2
776,588 + CCNA_00720 0.45 -1.7
776,593 + CCNA_00720 0.46 -1.1
776,615 + CCNA_00720 0.47 -2.7

Or see this region's nucleotide sequence