Experiment: PYE pH6 copy A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00633 and CCNA_00634 overlap by 4 nucleotides CCNA_00634 and CCNA_00635 are separated by 761 nucleotides
CCNA_00633: CCNA_00633 - receiver domain-glutamate methylesterase CheBII, at 679,391 to 680,467
_00633
CCNA_00634: CCNA_00634 - chemotaxis protein methyltransferase, at 680,464 to 681,294
_00634
CCNA_00635: CCNA_00635 - CHASE2 membrane receptor, at 682,056 to 683,531
_00635
Position (kb) 680
681
682 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 679.479 kb on + strand at 679.479 kb on + strand at 679.479 kb on + strand at 679.479 kb on + strand at 679.487 kb on - strand at 679.487 kb on - strand at 679.487 kb on - strand at 679.501 kb on - strand, within CCNA_00633 at 679.537 kb on + strand, within CCNA_00633 at 679.550 kb on - strand, within CCNA_00633 at 679.554 kb on - strand, within CCNA_00633 at 679.569 kb on + strand, within CCNA_00633 at 679.579 kb on - strand, within CCNA_00633 at 679.615 kb on + strand, within CCNA_00633 at 679.615 kb on + strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.657 kb on + strand, within CCNA_00633 at 679.667 kb on - strand, within CCNA_00633 at 679.677 kb on - strand, within CCNA_00633 at 679.681 kb on + strand, within CCNA_00633 at 679.743 kb on - strand, within CCNA_00633 at 679.758 kb on + strand, within CCNA_00633 at 679.758 kb on + strand, within CCNA_00633 at 679.758 kb on - strand, within CCNA_00633 at 679.763 kb on + strand, within CCNA_00633 at 679.766 kb on - strand, within CCNA_00633 at 679.776 kb on - strand, within CCNA_00633 at 679.781 kb on - strand, within CCNA_00633 at 679.783 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.839 kb on - strand, within CCNA_00633 at 679.839 kb on - strand, within CCNA_00633 at 679.854 kb on + strand, within CCNA_00633 at 679.858 kb on + strand, within CCNA_00633 at 679.878 kb on + strand, within CCNA_00633 at 679.888 kb on + strand, within CCNA_00633 at 679.896 kb on - strand at 679.896 kb on - strand, within CCNA_00633 at 679.909 kb on - strand, within CCNA_00633 at 679.920 kb on - strand, within CCNA_00633 at 679.923 kb on + strand, within CCNA_00633 at 679.972 kb on - strand, within CCNA_00633 at 679.982 kb on - strand, within CCNA_00633 at 679.982 kb on - strand, within CCNA_00633 at 679.988 kb on + strand, within CCNA_00633 at 679.996 kb on - strand, within CCNA_00633 at 680.007 kb on + strand, within CCNA_00633 at 680.019 kb on + strand, within CCNA_00633 at 680.023 kb on + strand, within CCNA_00633 at 680.038 kb on + strand, within CCNA_00633 at 680.066 kb on + strand, within CCNA_00633 at 680.066 kb on + strand, within CCNA_00633 at 680.074 kb on - strand, within CCNA_00633 at 680.074 kb on - strand, within CCNA_00633 at 680.074 kb on - strand, within CCNA_00633 at 680.098 kb on + strand, within CCNA_00633 at 680.098 kb on + strand, within CCNA_00633 at 680.122 kb on + strand, within CCNA_00633 at 680.130 kb on - strand, within CCNA_00633 at 680.130 kb on - strand, within CCNA_00633 at 680.200 kb on + strand, within CCNA_00633 at 680.206 kb on + strand, within CCNA_00633 at 680.208 kb on - strand, within CCNA_00633 at 680.216 kb on + strand, within CCNA_00633 at 680.216 kb on + strand, within CCNA_00633 at 680.224 kb on - strand, within CCNA_00633 at 680.224 kb on - strand, within CCNA_00633 at 680.224 kb on - strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.255 kb on - strand, within CCNA_00633 at 680.262 kb on - strand, within CCNA_00633 at 680.281 kb on - strand, within CCNA_00633 at 680.282 kb on - strand, within CCNA_00633 at 680.325 kb on - strand, within CCNA_00633 at 680.326 kb on + strand, within CCNA_00633 at 680.336 kb on + strand, within CCNA_00633 at 680.341 kb on + strand, within CCNA_00633 at 680.345 kb on - strand, within CCNA_00633 at 680.360 kb on + strand at 680.371 kb on + strand at 680.428 kb on - strand at 680.431 kb on + strand at 680.436 kb on + strand at 680.440 kb on + strand at 680.449 kb on + strand at 680.450 kb on + strand at 680.478 kb on - strand at 680.505 kb on - strand at 680.513 kb on + strand at 680.519 kb on - strand at 680.532 kb on + strand at 680.541 kb on - strand at 680.541 kb on - strand at 680.547 kb on + strand, within CCNA_00634 at 680.555 kb on - strand, within CCNA_00634 at 680.555 kb on - strand, within CCNA_00634 at 680.625 kb on - strand, within CCNA_00634 at 680.651 kb on - strand, within CCNA_00634 at 680.682 kb on - strand, within CCNA_00634 at 680.708 kb on + strand, within CCNA_00634 at 680.716 kb on - strand, within CCNA_00634 at 680.723 kb on - strand, within CCNA_00634 at 680.735 kb on - strand, within CCNA_00634 at 680.738 kb on - strand, within CCNA_00634 at 680.789 kb on - strand, within CCNA_00634 at 680.799 kb on + strand, within CCNA_00634 at 680.799 kb on - strand, within CCNA_00634 at 680.807 kb on - strand, within CCNA_00634 at 680.808 kb on - strand, within CCNA_00634 at 680.808 kb on - strand, within CCNA_00634 at 680.812 kb on - strand, within CCNA_00634 at 680.817 kb on + strand, within CCNA_00634 at 680.825 kb on - strand, within CCNA_00634 at 680.838 kb on + strand, within CCNA_00634 at 680.838 kb on + strand, within CCNA_00634 at 680.838 kb on + strand, within CCNA_00634 at 680.838 kb on + strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.900 kb on + strand, within CCNA_00634 at 680.903 kb on - strand, within CCNA_00634 at 681.034 kb on - strand, within CCNA_00634 at 681.042 kb on - strand, within CCNA_00634 at 681.042 kb on - strand, within CCNA_00634 at 681.054 kb on + strand, within CCNA_00634 at 681.054 kb on + strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.063 kb on - strand, within CCNA_00634 at 681.165 kb on - strand, within CCNA_00634 at 681.188 kb on - strand, within CCNA_00634 at 681.264 kb on - strand at 681.264 kb on - strand at 681.269 kb on - strand at 681.283 kb on + strand at 681.283 kb on + strand at 681.283 kb on + strand at 681.283 kb on + strand at 681.283 kb on + strand at 681.291 kb on - strand at 681.291 kb on - strand at 681.291 kb on - strand at 681.291 kb on - strand at 681.318 kb on - strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.330 kb on - strand at 681.330 kb on - strand at 681.330 kb on - strand at 681.389 kb on + strand at 681.397 kb on - strand at 681.397 kb on - strand at 681.457 kb on - strand at 681.477 kb on - strand at 681.502 kb on + strand at 681.502 kb on + strand at 681.502 kb on + strand at 681.510 kb on - strand at 681.538 kb on + strand at 681.552 kb on + strand at 681.562 kb on + strand at 681.573 kb on - strand at 681.581 kb on + strand at 681.586 kb on - strand at 681.611 kb on + strand at 681.635 kb on + strand at 681.659 kb on - strand at 681.727 kb on - strand at 681.808 kb on + strand at 681.808 kb on + strand at 681.816 kb on - strand at 681.859 kb on - strand at 681.866 kb on - strand at 681.935 kb on - strand at 681.943 kb on + strand at 681.943 kb on + strand at 681.943 kb on + strand at 681.943 kb on + strand at 681.943 kb on + strand at 681.943 kb on + strand at 681.951 kb on - strand at 681.951 kb on - strand at 681.951 kb on - strand at 681.951 kb on - strand at 681.951 kb on - strand at 681.987 kb on + strand at 682.022 kb on + strand at 682.028 kb on + strand at 682.030 kb on - strand at 682.044 kb on + strand at 682.117 kb on + strand at 682.142 kb on + strand at 682.142 kb on + strand at 682.155 kb on - strand at 682.227 kb on - strand, within CCNA_00635 at 682.227 kb on - strand, within CCNA_00635 at 682.236 kb on + strand, within CCNA_00635 at 682.237 kb on + strand, within CCNA_00635 at 682.237 kb on + strand, within CCNA_00635 at 682.271 kb on - strand, within CCNA_00635 at 682.275 kb on + strand, within CCNA_00635 at 682.279 kb on + strand, within CCNA_00635 at 682.283 kb on - strand, within CCNA_00635
Per-strain Table
Position Strand Gene LocusTag Fraction PYE pH6 copy A remove 679,479 + +0.4 679,479 + -0.2 679,479 + +0.2 679,479 + +0.5 679,487 - -2.5 679,487 - -2.4 679,487 - -1.4 679,501 - CCNA_00633 0.10 -1.9 679,537 + CCNA_00633 0.14 -1.8 679,550 - CCNA_00633 0.15 -2.3 679,554 - CCNA_00633 0.15 -0.6 679,569 + CCNA_00633 0.17 +1.4 679,579 - CCNA_00633 0.17 -0.4 679,615 + CCNA_00633 0.21 +1.5 679,615 + CCNA_00633 0.21 +0.1 679,623 - CCNA_00633 0.22 -1.4 679,623 - CCNA_00633 0.22 -1.3 679,623 - CCNA_00633 0.22 -3.3 679,623 - CCNA_00633 0.22 -2.7 679,657 + CCNA_00633 0.25 +0.8 679,667 - CCNA_00633 0.26 -0.9 679,677 - CCNA_00633 0.27 +0.7 679,681 + CCNA_00633 0.27 -0.2 679,743 - CCNA_00633 0.33 +1.3 679,758 + CCNA_00633 0.34 +1.4 679,758 + CCNA_00633 0.34 -0.0 679,758 - CCNA_00633 0.34 +0.6 679,763 + CCNA_00633 0.35 +0.7 679,766 - CCNA_00633 0.35 -0.1 679,776 - CCNA_00633 0.36 +1.1 679,781 - CCNA_00633 0.36 +0.6 679,783 + CCNA_00633 0.36 -0.1 679,831 + CCNA_00633 0.41 -1.1 679,831 + CCNA_00633 0.41 -1.4 679,831 + CCNA_00633 0.41 -1.7 679,831 + CCNA_00633 0.41 +0.6 679,831 + CCNA_00633 0.41 -0.3 679,831 + CCNA_00633 0.41 -0.3 679,839 - CCNA_00633 0.42 +0.1 679,839 - CCNA_00633 0.42 +1.0 679,854 + CCNA_00633 0.43 +0.7 679,858 + CCNA_00633 0.43 -1.7 679,878 + CCNA_00633 0.45 +0.1 679,888 + CCNA_00633 0.46 -0.4 679,896 - +0.1 679,896 - CCNA_00633 0.47 +0.6 679,909 - CCNA_00633 0.48 -0.2 679,920 - CCNA_00633 0.49 -2.9 679,923 + CCNA_00633 0.49 -1.8 679,972 - CCNA_00633 0.54 -1.2 679,982 - CCNA_00633 0.55 -0.1 679,982 - CCNA_00633 0.55 -1.1 679,988 + CCNA_00633 0.55 +0.7 679,996 - CCNA_00633 0.56 +0.1 680,007 + CCNA_00633 0.57 -1.5 680,019 + CCNA_00633 0.58 +1.1 680,023 + CCNA_00633 0.59 -0.9 680,038 + CCNA_00633 0.60 +1.7 680,066 + CCNA_00633 0.63 -1.8 680,066 + CCNA_00633 0.63 -1.2 680,074 - CCNA_00633 0.63 +1.7 680,074 - CCNA_00633 0.63 -1.4 680,074 - CCNA_00633 0.63 +3.3 680,098 + CCNA_00633 0.66 -0.5 680,098 + CCNA_00633 0.66 -0.3 680,122 + CCNA_00633 0.68 -0.3 680,130 - CCNA_00633 0.69 -1.4 680,130 - CCNA_00633 0.69 -0.6 680,200 + CCNA_00633 0.75 +1.2 680,206 + CCNA_00633 0.76 +0.1 680,208 - CCNA_00633 0.76 -1.0 680,216 + CCNA_00633 0.77 -0.3 680,216 + CCNA_00633 0.77 -1.4 680,224 - CCNA_00633 0.77 -0.1 680,224 - CCNA_00633 0.77 +0.4 680,224 - CCNA_00633 0.77 -0.6 680,236 + CCNA_00633 0.78 -1.4 680,236 + CCNA_00633 0.78 -2.4 680,236 + CCNA_00633 0.78 -0.8 680,236 + CCNA_00633 0.78 -1.4 680,236 + CCNA_00633 0.78 -0.1 680,236 + CCNA_00633 0.78 -1.3 680,236 + CCNA_00633 0.78 -0.9 680,236 + CCNA_00633 0.78 -0.4 680,236 + CCNA_00633 0.78 -1.0 680,236 + CCNA_00633 0.78 -1.3 680,236 + CCNA_00633 0.78 -0.3 680,244 - CCNA_00633 0.79 +4.1 680,244 - CCNA_00633 0.79 -1.9 680,244 - CCNA_00633 0.79 +0.7 680,244 - CCNA_00633 0.79 -0.3 680,244 - CCNA_00633 0.79 -0.9 680,244 - CCNA_00633 0.79 -2.2 680,244 - CCNA_00633 0.79 -0.3 680,244 - CCNA_00633 0.79 -1.2 680,244 - CCNA_00633 0.79 -2.1 680,244 - CCNA_00633 0.79 +0.3 680,255 - CCNA_00633 0.80 -2.4 680,262 - CCNA_00633 0.81 +0.1 680,281 - CCNA_00633 0.83 +0.1 680,282 - CCNA_00633 0.83 -0.6 680,325 - CCNA_00633 0.87 -1.4 680,326 + CCNA_00633 0.87 -1.3 680,336 + CCNA_00633 0.88 -0.3 680,341 + CCNA_00633 0.88 -1.6 680,345 - CCNA_00633 0.89 +0.0 680,360 + +0.4 680,371 + +0.7 680,428 - -0.9 680,431 + -0.2 680,436 + +1.0 680,440 + -1.2 680,449 + -1.1 680,450 + -1.6 680,478 - -2.2 680,505 - -0.6 680,513 + -2.1 680,519 - +0.9 680,532 + -0.9 680,541 - +0.2 680,541 - +0.3 680,547 + CCNA_00634 0.10 -0.8 680,555 - CCNA_00634 0.11 +0.4 680,555 - CCNA_00634 0.11 +0.1 680,625 - CCNA_00634 0.19 +0.7 680,651 - CCNA_00634 0.23 -0.9 680,682 - CCNA_00634 0.26 -1.2 680,708 + CCNA_00634 0.29 -0.1 680,716 - CCNA_00634 0.30 -0.3 680,723 - CCNA_00634 0.31 -0.3 680,735 - CCNA_00634 0.33 +0.3 680,738 - CCNA_00634 0.33 +1.0 680,789 - CCNA_00634 0.39 +0.4 680,799 + CCNA_00634 0.40 -0.6 680,799 - CCNA_00634 0.40 +0.7 680,807 - CCNA_00634 0.41 -1.3 680,808 - CCNA_00634 0.41 -2.2 680,808 - CCNA_00634 0.41 +0.7 680,812 - CCNA_00634 0.42 -0.3 680,817 + CCNA_00634 0.42 -0.2 680,825 - CCNA_00634 0.43 -0.7 680,838 + CCNA_00634 0.45 -0.7 680,838 + CCNA_00634 0.45 +0.1 680,838 + CCNA_00634 0.45 -1.3 680,838 + CCNA_00634 0.45 +0.6 680,846 - CCNA_00634 0.46 -0.6 680,846 - CCNA_00634 0.46 +0.2 680,846 - CCNA_00634 0.46 +0.1 680,846 - CCNA_00634 0.46 -0.1 680,846 - CCNA_00634 0.46 -1.0 680,846 - CCNA_00634 0.46 +0.0 680,900 + CCNA_00634 0.52 -0.4 680,903 - CCNA_00634 0.53 +2.2 681,034 - CCNA_00634 0.69 +1.2 681,042 - CCNA_00634 0.70 -1.7 681,042 - CCNA_00634 0.70 -0.7 681,054 + CCNA_00634 0.71 +0.3 681,054 + CCNA_00634 0.71 -0.5 681,062 - CCNA_00634 0.72 -1.2 681,062 - CCNA_00634 0.72 -3.4 681,062 - CCNA_00634 0.72 -3.1 681,062 - CCNA_00634 0.72 -1.5 681,062 - CCNA_00634 0.72 +0.5 681,062 - CCNA_00634 0.72 -1.3 681,062 - CCNA_00634 0.72 -1.3 681,063 - CCNA_00634 0.72 -1.0 681,165 - CCNA_00634 0.84 -2.5 681,188 - CCNA_00634 0.87 -1.7 681,264 - -1.9 681,264 - -1.7 681,269 - -2.8 681,283 + -2.9 681,283 + -2.2 681,283 + -2.3 681,283 + -2.5 681,283 + -0.9 681,291 - -1.7 681,291 - -0.3 681,291 - -1.6 681,291 - -2.0 681,318 - +0.7 681,322 + -1.4 681,322 + +0.4 681,322 + -1.1 681,322 + -1.5 681,322 + -1.3 681,322 + +0.5 681,322 + +0.7 681,322 + -1.6 681,322 + -2.5 681,330 - -1.1 681,330 - -0.9 681,330 - -0.9 681,389 + +1.1 681,397 - -2.2 681,397 - -0.9 681,457 - -0.4 681,477 - -0.0 681,502 + +0.1 681,502 + -1.4 681,502 + -3.2 681,510 - -1.6 681,538 + -2.6 681,552 + -1.7 681,562 + -3.4 681,573 - -2.0 681,581 + -2.3 681,586 - -0.9 681,611 + -2.7 681,635 + -0.9 681,659 - +0.7 681,727 - -2.8 681,808 + +1.1 681,808 + -2.4 681,816 - -0.8 681,859 - +0.1 681,866 - +1.0 681,935 - -3.5 681,943 + -0.4 681,943 + -2.1 681,943 + -0.7 681,943 + -3.2 681,943 + -2.0 681,943 + -1.1 681,951 - -1.3 681,951 - -0.5 681,951 - -0.6 681,951 - -2.4 681,951 - -0.4 681,987 + -1.7 682,022 + +1.7 682,028 + -1.3 682,030 - +0.4 682,044 + +0.5 682,117 + +0.1 682,142 + -0.6 682,142 + +3.7 682,155 - -3.2 682,227 - CCNA_00635 0.12 -2.2 682,227 - CCNA_00635 0.12 -4.0 682,236 + CCNA_00635 0.12 +0.1 682,237 + CCNA_00635 0.12 +0.3 682,237 + CCNA_00635 0.12 +1.5 682,271 - CCNA_00635 0.15 -1.4 682,275 + CCNA_00635 0.15 -0.3 682,279 + CCNA_00635 0.15 +1.7 682,283 - CCNA_00635 0.15 -0.9
Or see this region's nucleotide sequence