Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2921 and Ac3H11_2922 are separated by 72 nucleotides Ac3H11_2922 and Ac3H11_2923 are separated by 307 nucleotides
Ac3H11_2921 - Serine hydroxymethyltransferase (EC 2.1.2.1), at 1,237,436 to 1,238,680
_2921
Ac3H11_2922 - Ribonucleotide reductase transcriptional regulator NrdR, at 1,238,753 to 1,239,151
_2922
Ac3H11_2923 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,239,459 to 1,240,349
_2923
Position (kb)
1238
1239
1240 Strain fitness (log2 ratio)
-1
0
1 at 1239.149 kb on + strand at 1239.150 kb on - strand at 1239.150 kb on - strand at 1239.150 kb on - strand at 1239.153 kb on + strand at 1239.153 kb on + strand at 1239.153 kb on + strand at 1239.153 kb on + strand at 1239.153 kb on + strand at 1239.153 kb on + strand at 1239.153 kb on + strand at 1239.154 kb on - strand at 1239.154 kb on - strand at 1239.154 kb on - strand at 1239.154 kb on - strand at 1239.154 kb on - strand at 1239.265 kb on - strand at 1239.330 kb on + strand at 1239.330 kb on + strand at 1239.330 kb on + strand at 1239.331 kb on - strand at 1239.331 kb on - strand at 1239.331 kb on - strand at 1239.331 kb on - strand at 1239.371 kb on - strand at 1239.699 kb on + strand, within Ac3H11_2923 at 1239.699 kb on + strand, within Ac3H11_2923 at 1239.699 kb on + strand, within Ac3H11_2923 at 1239.699 kb on + strand, within Ac3H11_2923 at 1239.699 kb on + strand, within Ac3H11_2923 at 1239.699 kb on + strand, within Ac3H11_2923 at 1239.699 kb on + strand, within Ac3H11_2923 at 1239.699 kb on + strand, within Ac3H11_2923 at 1239.700 kb on - strand, within Ac3H11_2923 at 1239.700 kb on - strand, within Ac3H11_2923 at 1239.700 kb on - strand, within Ac3H11_2923 at 1239.700 kb on - strand, within Ac3H11_2923 at 1239.700 kb on - strand, within Ac3H11_2923 at 1239.700 kb on - strand, within Ac3H11_2923 at 1239.732 kb on + strand, within Ac3H11_2923 at 1239.733 kb on - strand, within Ac3H11_2923 at 1239.877 kb on + strand, within Ac3H11_2923 at 1239.877 kb on + strand, within Ac3H11_2923 at 1239.878 kb on - strand, within Ac3H11_2923 at 1239.878 kb on - strand, within Ac3H11_2923 at 1239.936 kb on + strand, within Ac3H11_2923 at 1239.936 kb on + strand, within Ac3H11_2923 at 1239.936 kb on + strand, within Ac3H11_2923 at 1239.936 kb on + strand, within Ac3H11_2923 at 1240.129 kb on - strand, within Ac3H11_2923
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 1,239,149 + +0.6 1,239,150 - -0.9 1,239,150 - -1.0 1,239,150 - +0.7 1,239,153 + +0.5 1,239,153 + +0.0 1,239,153 + +1.0 1,239,153 + -0.3 1,239,153 + -0.5 1,239,153 + -1.2 1,239,153 + +0.4 1,239,154 - -0.6 1,239,154 - +1.1 1,239,154 - -0.5 1,239,154 - +0.3 1,239,154 - -0.3 1,239,265 - +0.3 1,239,330 + +0.1 1,239,330 + +0.1 1,239,330 + -1.3 1,239,331 - -0.3 1,239,331 - -0.5 1,239,331 - +1.2 1,239,331 - +0.3 1,239,371 - +0.7 1,239,699 + Ac3H11_2923 0.27 -1.2 1,239,699 + Ac3H11_2923 0.27 -0.4 1,239,699 + Ac3H11_2923 0.27 +0.2 1,239,699 + Ac3H11_2923 0.27 -1.0 1,239,699 + Ac3H11_2923 0.27 +0.8 1,239,699 + Ac3H11_2923 0.27 -1.3 1,239,699 + Ac3H11_2923 0.27 +0.5 1,239,699 + Ac3H11_2923 0.27 +0.3 1,239,700 - Ac3H11_2923 0.27 -0.4 1,239,700 - Ac3H11_2923 0.27 -0.3 1,239,700 - Ac3H11_2923 0.27 -0.5 1,239,700 - Ac3H11_2923 0.27 +0.0 1,239,700 - Ac3H11_2923 0.27 +0.5 1,239,700 - Ac3H11_2923 0.27 -0.2 1,239,732 + Ac3H11_2923 0.31 +0.6 1,239,733 - Ac3H11_2923 0.31 -0.9 1,239,877 + Ac3H11_2923 0.47 +0.3 1,239,877 + Ac3H11_2923 0.47 +0.3 1,239,878 - Ac3H11_2923 0.47 +0.2 1,239,878 - Ac3H11_2923 0.47 +0.0 1,239,936 + Ac3H11_2923 0.54 -0.1 1,239,936 + Ac3H11_2923 0.54 -0.9 1,239,936 + Ac3H11_2923 0.54 +0.2 1,239,936 + Ac3H11_2923 0.54 -0.9 1,240,129 - Ac3H11_2923 0.75 +0.0
Or see this region's nucleotide sequence