Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1766 and Ac3H11_1779 are separated by 94 nucleotides Ac3H11_1779 and Ac3H11_1767 are separated by 74 nucleotides
Ac3H11_1766 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 379,923 to 381,038
_1766
Ac3H11_1779 - tRNA-Ser-CGA, at 381,133 to 381,219
_1779
Ac3H11_1767 - L-lactate dehydrogenase (EC 1.1.2.3), at 381,294 to 382,553
_1767
Position (kb) 381
382 Strain fitness (log2 ratio) -1
0
1 at 380.154 kb on + strand, within Ac3H11_1766 at 380.154 kb on + strand, within Ac3H11_1766 at 380.155 kb on - strand, within Ac3H11_1766 at 380.155 kb on - strand, within Ac3H11_1766 at 380.155 kb on - strand, within Ac3H11_1766 at 380.463 kb on + strand, within Ac3H11_1766 at 380.463 kb on + strand, within Ac3H11_1766 at 380.463 kb on + strand, within Ac3H11_1766 at 380.464 kb on - strand, within Ac3H11_1766 at 380.464 kb on - strand, within Ac3H11_1766 at 380.550 kb on + strand, within Ac3H11_1766 at 380.550 kb on + strand, within Ac3H11_1766 at 380.551 kb on - strand, within Ac3H11_1766 at 380.640 kb on + strand, within Ac3H11_1766 at 380.994 kb on + strand at 380.995 kb on - strand at 381.044 kb on + strand at 381.044 kb on + strand at 381.045 kb on - strand at 381.045 kb on - strand at 381.045 kb on - strand at 381.437 kb on - strand, within Ac3H11_1767 at 381.437 kb on - strand, within Ac3H11_1767 at 381.437 kb on - strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.973 kb on - strand, within Ac3H11_1767 at 381.973 kb on - strand, within Ac3H11_1767 at 382.057 kb on - strand, within Ac3H11_1767 at 382.060 kb on + strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 380,154 + Ac3H11_1766 0.21 +0.6 380,154 + Ac3H11_1766 0.21 +0.5 380,155 - Ac3H11_1766 0.21 -0.6 380,155 - Ac3H11_1766 0.21 +1.7 380,155 - Ac3H11_1766 0.21 -0.5 380,463 + Ac3H11_1766 0.48 +0.2 380,463 + Ac3H11_1766 0.48 +0.3 380,463 + Ac3H11_1766 0.48 +1.6 380,464 - Ac3H11_1766 0.48 +0.1 380,464 - Ac3H11_1766 0.48 -0.8 380,550 + Ac3H11_1766 0.56 -0.5 380,550 + Ac3H11_1766 0.56 -0.0 380,551 - Ac3H11_1766 0.56 +0.1 380,640 + Ac3H11_1766 0.64 -0.0 380,994 + -0.0 380,995 - +0.2 381,044 + +0.3 381,044 + +0.2 381,045 - -0.5 381,045 - -0.0 381,045 - +0.2 381,437 - Ac3H11_1767 0.11 -0.6 381,437 - Ac3H11_1767 0.11 +0.6 381,437 - Ac3H11_1767 0.11 -0.6 381,972 + Ac3H11_1767 0.54 -0.3 381,972 + Ac3H11_1767 0.54 -0.4 381,972 + Ac3H11_1767 0.54 -1.7 381,972 + Ac3H11_1767 0.54 -0.8 381,972 + Ac3H11_1767 0.54 -0.4 381,972 + Ac3H11_1767 0.54 +0.1 381,973 - Ac3H11_1767 0.54 -0.6 381,973 - Ac3H11_1767 0.54 -0.6 382,057 - Ac3H11_1767 0.61 -0.4 382,060 + Ac3H11_1767 0.61 -0.3 382,061 - Ac3H11_1767 0.61 -0.7 382,061 - Ac3H11_1767 0.61 -0.5 382,061 - Ac3H11_1767 0.61 +0.3 382,061 - Ac3H11_1767 0.61 -0.6 382,061 - Ac3H11_1767 0.61 +1.0 382,061 - Ac3H11_1767 0.61 -0.1
Or see this region's nucleotide sequence