Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04170

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04165 and AO353_04170 are separated by 241 nucleotidesAO353_04170 and AO353_04175 are separated by 369 nucleotides AO353_04165: AO353_04165 - isomerase, at 892,890 to 893,672 _04165 AO353_04170: AO353_04170 - hypothetical protein, at 893,914 to 894,384 _04170 AO353_04175: AO353_04175 - glycerol uptake facilitator GlpF, at 894,754 to 895,605 _04175 Position (kb) 893 894 895Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 892.999 kb on + strand, within AO353_04165at 892.999 kb on + strand, within AO353_04165at 893.000 kb on - strand, within AO353_04165at 893.018 kb on + strand, within AO353_04165at 893.107 kb on + strand, within AO353_04165at 893.108 kb on - strand, within AO353_04165at 893.381 kb on + strand, within AO353_04165at 893.381 kb on + strand, within AO353_04165at 893.381 kb on + strand, within AO353_04165at 893.381 kb on + strand, within AO353_04165at 893.381 kb on + strand, within AO353_04165at 893.381 kb on + strand, within AO353_04165at 893.381 kb on + strand, within AO353_04165at 893.381 kb on + strand, within AO353_04165at 893.382 kb on - strand, within AO353_04165at 893.382 kb on - strand, within AO353_04165at 893.382 kb on - strand, within AO353_04165at 893.416 kb on + strand, within AO353_04165at 893.416 kb on + strand, within AO353_04165at 893.416 kb on + strand, within AO353_04165at 893.416 kb on + strand, within AO353_04165at 893.416 kb on + strand, within AO353_04165at 893.416 kb on + strand, within AO353_04165at 893.416 kb on + strand, within AO353_04165at 893.417 kb on - strand, within AO353_04165at 893.417 kb on - strand, within AO353_04165at 893.417 kb on - strand, within AO353_04165at 893.417 kb on - strand, within AO353_04165at 893.417 kb on - strand, within AO353_04165at 893.417 kb on - strand, within AO353_04165at 893.417 kb on - strand, within AO353_04165at 893.417 kb on - strand, within AO353_04165at 893.417 kb on - strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.434 kb on + strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.435 kb on - strand, within AO353_04165at 893.469 kb on + strand, within AO353_04165at 893.469 kb on + strand, within AO353_04165at 893.469 kb on + strand, within AO353_04165at 893.470 kb on - strand, within AO353_04165at 893.470 kb on - strand, within AO353_04165at 893.470 kb on - strand, within AO353_04165at 893.498 kb on + strand, within AO353_04165at 893.560 kb on - strand, within AO353_04165at 893.665 kb on - strandat 893.692 kb on - strandat 893.758 kb on + strandat 893.835 kb on - strandat 893.901 kb on + strandat 893.901 kb on + strandat 893.901 kb on + strandat 893.901 kb on + strandat 893.901 kb on + strandat 893.901 kb on + strandat 893.902 kb on - strandat 893.902 kb on - strandat 893.902 kb on - strandat 893.902 kb on - strandat 893.902 kb on - strandat 893.902 kb on - strandat 894.011 kb on + strand, within AO353_04170at 894.011 kb on + strand, within AO353_04170at 894.011 kb on + strand, within AO353_04170at 894.011 kb on + strand, within AO353_04170at 894.011 kb on + strand, within AO353_04170at 894.012 kb on - strand, within AO353_04170at 894.012 kb on - strand, within AO353_04170at 894.012 kb on - strand, within AO353_04170at 894.012 kb on - strand, within AO353_04170at 894.012 kb on - strand, within AO353_04170at 894.012 kb on - strand, within AO353_04170at 894.012 kb on - strand, within AO353_04170at 894.012 kb on - strand, within AO353_04170at 894.012 kb on - strand, within AO353_04170at 894.012 kb on - strand, within AO353_04170at 894.012 kb on - strand, within AO353_04170at 894.015 kb on + strand, within AO353_04170at 894.015 kb on + strand, within AO353_04170at 894.015 kb on + strand, within AO353_04170at 894.015 kb on + strand, within AO353_04170at 894.015 kb on + strand, within AO353_04170at 894.074 kb on - strand, within AO353_04170at 894.099 kb on - strand, within AO353_04170at 894.175 kb on + strand, within AO353_04170at 894.175 kb on + strand, within AO353_04170at 894.176 kb on - strand, within AO353_04170at 894.176 kb on - strand, within AO353_04170at 894.176 kb on - strand, within AO353_04170at 894.176 kb on - strand, within AO353_04170at 894.176 kb on - strand, within AO353_04170at 894.299 kb on + strand, within AO353_04170at 894.299 kb on + strand, within AO353_04170at 894.300 kb on - strand, within AO353_04170at 894.300 kb on - strand, within AO353_04170at 894.326 kb on + strand, within AO353_04170at 894.326 kb on + strand, within AO353_04170at 894.326 kb on + strand, within AO353_04170at 894.326 kb on + strand, within AO353_04170at 894.326 kb on + strand, within AO353_04170at 894.326 kb on + strand, within AO353_04170at 894.326 kb on + strand, within AO353_04170at 894.326 kb on + strand, within AO353_04170at 894.326 kb on + strand, within AO353_04170at 894.327 kb on - strand, within AO353_04170at 894.327 kb on - strand, within AO353_04170at 894.327 kb on - strand, within AO353_04170at 894.327 kb on - strand, within AO353_04170at 894.327 kb on - strand, within AO353_04170at 894.327 kb on - strand, within AO353_04170at 894.416 kb on + strandat 894.431 kb on + strandat 894.431 kb on + strandat 894.432 kb on - strandat 894.456 kb on + strandat 894.456 kb on + strandat 894.456 kb on + strandat 894.456 kb on + strandat 894.456 kb on + strandat 894.457 kb on - strandat 894.457 kb on - strandat 894.457 kb on - strandat 894.457 kb on - strandat 894.483 kb on + strandat 894.483 kb on + strandat 894.484 kb on - strandat 894.549 kb on + strandat 894.549 kb on + strandat 894.549 kb on + strandat 894.549 kb on + strandat 894.550 kb on - strandat 894.550 kb on - strandat 894.555 kb on - strandat 894.555 kb on - strandat 894.558 kb on + strandat 894.605 kb on + strandat 894.607 kb on + strandat 894.608 kb on - strandat 894.625 kb on + strandat 894.625 kb on + strandat 894.628 kb on + strandat 894.628 kb on + strandat 894.628 kb on + strandat 894.628 kb on + strandat 894.628 kb on + strandat 894.628 kb on + strandat 894.628 kb on + strandat 894.628 kb on + strandat 894.629 kb on - strandat 894.629 kb on - strandat 894.629 kb on - strandat 894.629 kb on - strandat 894.629 kb on - strandat 894.629 kb on - strandat 894.629 kb on - strandat 894.629 kb on - strandat 894.632 kb on + strandat 894.632 kb on + strandat 894.633 kb on - strandat 894.633 kb on - strandat 894.646 kb on + strandat 894.646 kb on + strandat 894.646 kb on + strandat 894.647 kb on - strandat 894.659 kb on + strandat 894.821 kb on + strandat 894.931 kb on + strand, within AO353_04175at 894.932 kb on - strand, within AO353_04175at 894.993 kb on - strand, within AO353_04175at 895.014 kb on + strand, within AO353_04175at 895.014 kb on + strand, within AO353_04175at 895.014 kb on + strand, within AO353_04175at 895.014 kb on + strand, within AO353_04175at 895.015 kb on - strand, within AO353_04175at 895.027 kb on + strand, within AO353_04175at 895.027 kb on + strand, within AO353_04175at 895.027 kb on + strand, within AO353_04175at 895.027 kb on + strand, within AO353_04175at 895.028 kb on - strand, within AO353_04175at 895.075 kb on + strand, within AO353_04175at 895.085 kb on - strand, within AO353_04175at 895.336 kb on - strand, within AO353_04175

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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892,999 + AO353_04165 0.14 -0.4
892,999 + AO353_04165 0.14 -0.4
893,000 - AO353_04165 0.14 +0.4
893,018 + AO353_04165 0.16 +0.1
893,107 + AO353_04165 0.28 -0.1
893,108 - AO353_04165 0.28 -0.2
893,381 + AO353_04165 0.63 -0.7
893,381 + AO353_04165 0.63 -1.3
893,381 + AO353_04165 0.63 +0.9
893,381 + AO353_04165 0.63 -0.3
893,381 + AO353_04165 0.63 -1.0
893,381 + AO353_04165 0.63 -0.8
893,381 + AO353_04165 0.63 -0.9
893,381 + AO353_04165 0.63 -1.9
893,382 - AO353_04165 0.63 -1.0
893,382 - AO353_04165 0.63 +0.1
893,382 - AO353_04165 0.63 -0.3
893,416 + AO353_04165 0.67 -1.4
893,416 + AO353_04165 0.67 -0.2
893,416 + AO353_04165 0.67 -0.9
893,416 + AO353_04165 0.67 +0.1
893,416 + AO353_04165 0.67 -0.8
893,416 + AO353_04165 0.67 +0.7
893,416 + AO353_04165 0.67 +1.3
893,417 - AO353_04165 0.67 +0.4
893,417 - AO353_04165 0.67 -0.4
893,417 - AO353_04165 0.67 +0.3
893,417 - AO353_04165 0.67 -3.0
893,417 - AO353_04165 0.67 -0.4
893,417 - AO353_04165 0.67 -1.0
893,417 - AO353_04165 0.67 +0.7
893,417 - AO353_04165 0.67 -0.5
893,417 - AO353_04165 0.67 -0.4
893,434 + AO353_04165 0.69 +1.6
893,434 + AO353_04165 0.69 +0.5
893,434 + AO353_04165 0.69 -0.3
893,434 + AO353_04165 0.69 -1.0
893,434 + AO353_04165 0.69 +0.9
893,434 + AO353_04165 0.69 -0.2
893,434 + AO353_04165 0.69 +0.8
893,434 + AO353_04165 0.69 +1.9
893,434 + AO353_04165 0.69 -0.1
893,434 + AO353_04165 0.69 +0.4
893,434 + AO353_04165 0.69 +0.6
893,434 + AO353_04165 0.69 -1.0
893,434 + AO353_04165 0.69 +1.2
893,434 + AO353_04165 0.69 -0.3
893,434 + AO353_04165 0.69 -0.0
893,434 + AO353_04165 0.69 -1.7
893,434 + AO353_04165 0.69 -0.6
893,434 + AO353_04165 0.69 -0.1
893,434 + AO353_04165 0.69 +0.3
893,434 + AO353_04165 0.69 -1.4
893,434 + AO353_04165 0.69 +2.1
893,434 + AO353_04165 0.69 -1.5
893,434 + AO353_04165 0.69 +0.1
893,435 - AO353_04165 0.70 -0.4
893,435 - AO353_04165 0.70 -0.4
893,435 - AO353_04165 0.70 -0.8
893,435 - AO353_04165 0.70 -0.1
893,435 - AO353_04165 0.70 -0.7
893,435 - AO353_04165 0.70 +1.0
893,435 - AO353_04165 0.70 -0.3
893,435 - AO353_04165 0.70 -0.3
893,435 - AO353_04165 0.70 -1.3
893,435 - AO353_04165 0.70 +2.6
893,435 - AO353_04165 0.70 -0.0
893,435 - AO353_04165 0.70 -0.0
893,435 - AO353_04165 0.70 +1.2
893,435 - AO353_04165 0.70 -0.0
893,435 - AO353_04165 0.70 -1.3
893,435 - AO353_04165 0.70 -1.1
893,435 - AO353_04165 0.70 -0.3
893,435 - AO353_04165 0.70 -0.0
893,435 - AO353_04165 0.70 -0.4
893,435 - AO353_04165 0.70 -0.6
893,435 - AO353_04165 0.70 -1.8
893,435 - AO353_04165 0.70 -0.3
893,435 - AO353_04165 0.70 -1.0
893,435 - AO353_04165 0.70 -0.3
893,435 - AO353_04165 0.70 +1.0
893,435 - AO353_04165 0.70 +0.2
893,435 - AO353_04165 0.70 +0.6
893,469 + AO353_04165 0.74 -0.2
893,469 + AO353_04165 0.74 +0.0
893,469 + AO353_04165 0.74 -0.9
893,470 - AO353_04165 0.74 -0.7
893,470 - AO353_04165 0.74 +1.1
893,470 - AO353_04165 0.74 -0.0
893,498 + AO353_04165 0.78 -0.1
893,560 - AO353_04165 0.86 -0.8
893,665 - -1.0
893,692 - +1.1
893,758 + -0.7
893,835 - -1.6
893,901 + -0.2
893,901 + -1.6
893,901 + +0.7
893,901 + -0.4
893,901 + -0.8
893,901 + -0.4
893,902 - +0.7
893,902 - -0.4
893,902 - -0.1
893,902 - -0.3
893,902 - -0.8
893,902 - +0.4
894,011 + AO353_04170 0.21 +0.7
894,011 + AO353_04170 0.21 +0.6
894,011 + AO353_04170 0.21 -0.4
894,011 + AO353_04170 0.21 -0.4
894,011 + AO353_04170 0.21 -0.0
894,012 - AO353_04170 0.21 -1.1
894,012 - AO353_04170 0.21 -0.6
894,012 - AO353_04170 0.21 -1.9
894,012 - AO353_04170 0.21 +0.2
894,012 - AO353_04170 0.21 +0.2
894,012 - AO353_04170 0.21 -1.9
894,012 - AO353_04170 0.21 -2.3
894,012 - AO353_04170 0.21 -0.4
894,012 - AO353_04170 0.21 +0.6
894,012 - AO353_04170 0.21 -2.6
894,012 - AO353_04170 0.21 -2.4
894,015 + AO353_04170 0.21 +0.3
894,015 + AO353_04170 0.21 -0.6
894,015 + AO353_04170 0.21 -1.4
894,015 + AO353_04170 0.21 +0.4
894,015 + AO353_04170 0.21 +0.7
894,074 - AO353_04170 0.34 -1.4
894,099 - AO353_04170 0.39 -0.8
894,175 + AO353_04170 0.55 -1.7
894,175 + AO353_04170 0.55 -0.2
894,176 - AO353_04170 0.56 -1.8
894,176 - AO353_04170 0.56 -0.4
894,176 - AO353_04170 0.56 -1.8
894,176 - AO353_04170 0.56 -1.0
894,176 - AO353_04170 0.56 -1.9
894,299 + AO353_04170 0.82 -0.0
894,299 + AO353_04170 0.82 +0.1
894,300 - AO353_04170 0.82 -1.6
894,300 - AO353_04170 0.82 -1.1
894,326 + AO353_04170 0.87 -0.2
894,326 + AO353_04170 0.87 +1.4
894,326 + AO353_04170 0.87 +0.4
894,326 + AO353_04170 0.87 -1.6
894,326 + AO353_04170 0.87 -0.0
894,326 + AO353_04170 0.87 -0.4
894,326 + AO353_04170 0.87 -1.3
894,326 + AO353_04170 0.87 -0.3
894,326 + AO353_04170 0.87 +0.2
894,327 - AO353_04170 0.88 -2.5
894,327 - AO353_04170 0.88 -1.4
894,327 - AO353_04170 0.88 +1.6
894,327 - AO353_04170 0.88 -1.0
894,327 - AO353_04170 0.88 -1.4
894,327 - AO353_04170 0.88 -1.0
894,416 + -0.0
894,431 + +0.3
894,431 + +0.7
894,432 - -0.1
894,456 + +0.2
894,456 + -0.8
894,456 + +0.4
894,456 + +0.6
894,456 + +0.0
894,457 - -0.0
894,457 - +0.4
894,457 - -0.4
894,457 - -1.3
894,483 + +0.6
894,483 + +0.6
894,484 - -1.0
894,549 + -0.0
894,549 + +0.5
894,549 + +0.9
894,549 + +0.6
894,550 - -1.8
894,550 - -0.0
894,555 - -1.6
894,555 - -1.9
894,558 + -0.3
894,605 + -0.3
894,607 + +1.4
894,608 - -1.4
894,625 + -1.1
894,625 + +0.4
894,628 + +0.1
894,628 + +0.6
894,628 + +0.7
894,628 + -0.2
894,628 + -1.0
894,628 + +0.2
894,628 + -0.0
894,628 + +0.4
894,629 - -0.4
894,629 - -0.0
894,629 - -1.9
894,629 - -1.3
894,629 - -1.6
894,629 - +0.6
894,629 - -0.4
894,629 - -1.0
894,632 + +0.3
894,632 + +0.0
894,633 - -1.0
894,633 - -0.4
894,646 + -0.3
894,646 + +0.1
894,646 + -0.0
894,647 - -1.3
894,659 + +1.1
894,821 + -0.9
894,931 + AO353_04175 0.21 -0.4
894,932 - AO353_04175 0.21 -1.0
894,993 - AO353_04175 0.28 -0.0
895,014 + AO353_04175 0.31 -0.4
895,014 + AO353_04175 0.31 -0.0
895,014 + AO353_04175 0.31 -0.4
895,014 + AO353_04175 0.31 -1.0
895,015 - AO353_04175 0.31 -0.4
895,027 + AO353_04175 0.32 -0.0
895,027 + AO353_04175 0.32 +0.8
895,027 + AO353_04175 0.32 -1.4
895,027 + AO353_04175 0.32 -0.8
895,028 - AO353_04175 0.32 +0.6
895,075 + AO353_04175 0.38 +1.6
895,085 - AO353_04175 0.39 -2.3
895,336 - AO353_04175 0.68 -1.3

Or see this region's nucleotide sequence