Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS20540

Experiment: L-Alanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS20530 and ABZR86_RS20535 are separated by 87 nucleotidesABZR86_RS20535 and ABZR86_RS20540 are separated by 43 nucleotidesABZR86_RS20540 and ABZR86_RS20545 are separated by 192 nucleotides ABZR86_RS20530: ABZR86_RS20530 - YccS family putative transporter, at 52,572 to 54,725 _RS20530 ABZR86_RS20535: ABZR86_RS20535 - membrane protein, at 54,813 to 55,361 _RS20535 ABZR86_RS20540: ABZR86_RS20540 - 3-oxoacyl-ACP reductase FabG, at 55,405 to 56,133 _RS20540 ABZR86_RS20545: ABZR86_RS20545 - aldo/keto reductase family oxidoreductase, at 56,326 to 57,216 _RS20545 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2 3at 54.619 kb on - strandat 54.858 kb on + strandat 54.858 kb on + strandat 54.859 kb on - strandat 54.859 kb on - strandat 54.859 kb on - strandat 55.000 kb on - strand, within ABZR86_RS20535at 55.036 kb on + strand, within ABZR86_RS20535at 55.037 kb on - strand, within ABZR86_RS20535at 55.037 kb on - strand, within ABZR86_RS20535at 55.102 kb on - strand, within ABZR86_RS20535at 55.171 kb on - strand, within ABZR86_RS20535at 55.171 kb on - strand, within ABZR86_RS20535at 55.171 kb on - strand, within ABZR86_RS20535at 55.173 kb on - strand, within ABZR86_RS20535at 55.272 kb on + strand, within ABZR86_RS20535at 55.273 kb on - strand, within ABZR86_RS20535at 55.290 kb on + strand, within ABZR86_RS20535at 55.291 kb on - strand, within ABZR86_RS20535at 55.483 kb on + strand, within ABZR86_RS20540at 55.484 kb on - strand, within ABZR86_RS20540at 55.750 kb on + strand, within ABZR86_RS20540at 55.750 kb on + strand, within ABZR86_RS20540at 55.751 kb on - strand, within ABZR86_RS20540at 55.751 kb on - strand, within ABZR86_RS20540at 55.751 kb on - strand, within ABZR86_RS20540at 55.861 kb on + strand, within ABZR86_RS20540at 55.861 kb on + strand, within ABZR86_RS20540at 55.861 kb on + strand, within ABZR86_RS20540at 55.861 kb on + strand, within ABZR86_RS20540at 55.861 kb on + strand, within ABZR86_RS20540at 55.862 kb on - strand, within ABZR86_RS20540at 55.862 kb on - strand, within ABZR86_RS20540at 55.862 kb on - strand, within ABZR86_RS20540at 55.862 kb on - strand, within ABZR86_RS20540at 56.089 kb on + strandat 56.089 kb on + strandat 56.090 kb on - strandat 56.283 kb on + strandat 56.283 kb on + strandat 56.294 kb on + strandat 56.482 kb on + strand, within ABZR86_RS20545at 56.482 kb on + strand, within ABZR86_RS20545at 56.483 kb on - strand, within ABZR86_RS20545at 56.483 kb on - strand, within ABZR86_RS20545at 56.491 kb on + strand, within ABZR86_RS20545at 56.492 kb on - strand, within ABZR86_RS20545at 56.492 kb on - strand, within ABZR86_RS20545at 56.617 kb on + strand, within ABZR86_RS20545at 56.617 kb on + strand, within ABZR86_RS20545at 56.636 kb on - strand, within ABZR86_RS20545at 56.676 kb on + strand, within ABZR86_RS20545at 56.717 kb on - strand, within ABZR86_RS20545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
remove
54,619 - +0.6
54,858 + +0.2
54,858 + +0.1
54,859 - -0.2
54,859 - -0.6
54,859 - +1.5
55,000 - ABZR86_RS20535 0.34 +0.1
55,036 + ABZR86_RS20535 0.41 +1.1
55,037 - ABZR86_RS20535 0.41 +0.2
55,037 - ABZR86_RS20535 0.41 +0.6
55,102 - ABZR86_RS20535 0.53 -0.2
55,171 - ABZR86_RS20535 0.65 +0.9
55,171 - ABZR86_RS20535 0.65 +0.4
55,171 - ABZR86_RS20535 0.65 +0.3
55,173 - ABZR86_RS20535 0.66 +1.3
55,272 + ABZR86_RS20535 0.84 -1.2
55,273 - ABZR86_RS20535 0.84 +1.0
55,290 + ABZR86_RS20535 0.87 -0.6
55,291 - ABZR86_RS20535 0.87 -0.4
55,483 + ABZR86_RS20540 0.11 +1.0
55,484 - ABZR86_RS20540 0.11 +2.2
55,750 + ABZR86_RS20540 0.47 -0.2
55,750 + ABZR86_RS20540 0.47 +0.5
55,751 - ABZR86_RS20540 0.47 -2.0
55,751 - ABZR86_RS20540 0.47 -0.1
55,751 - ABZR86_RS20540 0.47 +0.6
55,861 + ABZR86_RS20540 0.63 -0.2
55,861 + ABZR86_RS20540 0.63 +0.1
55,861 + ABZR86_RS20540 0.63 -0.2
55,861 + ABZR86_RS20540 0.63 +1.0
55,861 + ABZR86_RS20540 0.63 -0.2
55,862 - ABZR86_RS20540 0.63 +0.3
55,862 - ABZR86_RS20540 0.63 +0.2
55,862 - ABZR86_RS20540 0.63 +0.7
55,862 - ABZR86_RS20540 0.63 +0.5
56,089 + +0.2
56,089 + -0.7
56,090 - +0.1
56,283 + +0.9
56,283 + -0.0
56,294 + +0.4
56,482 + ABZR86_RS20545 0.18 +1.1
56,482 + ABZR86_RS20545 0.18 +0.3
56,483 - ABZR86_RS20545 0.18 -0.0
56,483 - ABZR86_RS20545 0.18 +0.6
56,491 + ABZR86_RS20545 0.19 +3.0
56,492 - ABZR86_RS20545 0.19 +1.2
56,492 - ABZR86_RS20545 0.19 +0.2
56,617 + ABZR86_RS20545 0.33 +0.5
56,617 + ABZR86_RS20545 0.33 +0.4
56,636 - ABZR86_RS20545 0.35 -0.1
56,676 + ABZR86_RS20545 0.39 +0.7
56,717 - ABZR86_RS20545 0.44 +1.4

Or see this region's nucleotide sequence