Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19125

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19120 and ABZR86_RS19125 are separated by 32 nucleotidesABZR86_RS19125 and ABZR86_RS19130 are separated by 183 nucleotidesABZR86_RS19130 and ABZR86_RS19135 are separated by 101 nucleotides ABZR86_RS19120: ABZR86_RS19120 - response regulator, at 268,629 to 269,324 _RS19120 ABZR86_RS19125: ABZR86_RS19125 - ATP-binding protein, at 269,357 to 270,634 _RS19125 ABZR86_RS19130: ABZR86_RS19130 - outer membrane beta-barrel protein, at 270,818 to 271,510 _RS19130 ABZR86_RS19135: ABZR86_RS19135 - hypothetical protein, at 271,612 to 271,872 _RS19135 Position (kb) 269 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1at 268.485 kb on - strandat 268.485 kb on - strandat 268.584 kb on + strandat 268.588 kb on + strandat 268.589 kb on - strandat 268.589 kb on - strandat 268.614 kb on - strandat 268.687 kb on - strandat 268.816 kb on + strand, within ABZR86_RS19120at 268.817 kb on - strand, within ABZR86_RS19120at 268.920 kb on + strand, within ABZR86_RS19120at 268.921 kb on - strand, within ABZR86_RS19120at 268.921 kb on - strand, within ABZR86_RS19120at 269.056 kb on + strand, within ABZR86_RS19120at 269.057 kb on - strand, within ABZR86_RS19120at 269.057 kb on - strand, within ABZR86_RS19120at 269.259 kb on + strandat 269.259 kb on + strandat 269.259 kb on + strandat 269.260 kb on - strandat 269.286 kb on + strandat 269.387 kb on + strandat 269.387 kb on + strandat 269.387 kb on + strandat 269.387 kb on + strandat 269.388 kb on - strandat 269.500 kb on + strand, within ABZR86_RS19125at 269.513 kb on + strand, within ABZR86_RS19125at 269.577 kb on - strand, within ABZR86_RS19125at 269.687 kb on + strand, within ABZR86_RS19125at 269.687 kb on + strand, within ABZR86_RS19125at 269.687 kb on + strand, within ABZR86_RS19125at 269.688 kb on - strand, within ABZR86_RS19125at 269.747 kb on + strand, within ABZR86_RS19125at 269.828 kb on + strand, within ABZR86_RS19125at 269.829 kb on - strand, within ABZR86_RS19125at 269.829 kb on - strand, within ABZR86_RS19125at 269.829 kb on - strand, within ABZR86_RS19125at 269.870 kb on + strand, within ABZR86_RS19125at 269.904 kb on + strand, within ABZR86_RS19125at 269.905 kb on - strand, within ABZR86_RS19125at 269.956 kb on + strand, within ABZR86_RS19125at 269.957 kb on - strand, within ABZR86_RS19125at 270.036 kb on + strand, within ABZR86_RS19125at 270.037 kb on - strand, within ABZR86_RS19125at 270.037 kb on - strand, within ABZR86_RS19125at 270.041 kb on - strand, within ABZR86_RS19125at 270.113 kb on + strand, within ABZR86_RS19125at 270.136 kb on + strand, within ABZR86_RS19125at 270.176 kb on + strand, within ABZR86_RS19125at 270.177 kb on - strand, within ABZR86_RS19125at 270.215 kb on + strand, within ABZR86_RS19125at 270.241 kb on + strand, within ABZR86_RS19125at 270.241 kb on + strand, within ABZR86_RS19125at 270.482 kb on + strand, within ABZR86_RS19125at 270.482 kb on + strand, within ABZR86_RS19125at 270.482 kb on + strand, within ABZR86_RS19125at 270.482 kb on + strand, within ABZR86_RS19125at 270.483 kb on - strand, within ABZR86_RS19125at 270.483 kb on - strand, within ABZR86_RS19125at 270.483 kb on - strand, within ABZR86_RS19125at 270.483 kb on - strand, within ABZR86_RS19125at 270.582 kb on + strandat 270.583 kb on - strandat 270.693 kb on + strandat 270.703 kb on + strandat 270.729 kb on + strandat 270.791 kb on - strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.927 kb on - strand, within ABZR86_RS19130at 271.177 kb on - strand, within ABZR86_RS19130at 271.177 kb on - strand, within ABZR86_RS19130at 271.177 kb on - strand, within ABZR86_RS19130at 271.220 kb on + strand, within ABZR86_RS19130at 271.221 kb on - strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.241 kb on + strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.242 kb on - strand, within ABZR86_RS19130at 271.333 kb on + strand, within ABZR86_RS19130at 271.333 kb on + strand, within ABZR86_RS19130at 271.334 kb on - strand, within ABZR86_RS19130at 271.334 kb on - strand, within ABZR86_RS19130at 271.334 kb on - strand, within ABZR86_RS19130at 271.336 kb on + strand, within ABZR86_RS19130at 271.337 kb on - strand, within ABZR86_RS19130at 271.337 kb on - strand, within ABZR86_RS19130at 271.370 kb on + strand, within ABZR86_RS19130at 271.384 kb on + strand, within ABZR86_RS19130at 271.385 kb on - strand, within ABZR86_RS19130at 271.465 kb on - strandat 271.496 kb on + strandat 271.508 kb on + strandat 271.508 kb on + strandat 271.509 kb on - strandat 271.509 kb on - strandat 271.516 kb on + strandat 271.516 kb on + strandat 271.517 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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268,485 - +0.0
268,485 - -1.0
268,584 + -2.6
268,588 + -0.3
268,589 - -0.4
268,589 - -1.1
268,614 - -0.1
268,687 - +0.7
268,816 + ABZR86_RS19120 0.27 +0.4
268,817 - ABZR86_RS19120 0.27 -0.6
268,920 + ABZR86_RS19120 0.42 -0.2
268,921 - ABZR86_RS19120 0.42 +1.6
268,921 - ABZR86_RS19120 0.42 +1.1
269,056 + ABZR86_RS19120 0.61 +1.1
269,057 - ABZR86_RS19120 0.61 -0.0
269,057 - ABZR86_RS19120 0.61 +0.2
269,259 + -0.6
269,259 + -0.1
269,259 + -0.4
269,260 - -2.3
269,286 + +0.1
269,387 + -0.9
269,387 + -0.0
269,387 + -0.2
269,387 + -0.6
269,388 - +0.3
269,500 + ABZR86_RS19125 0.11 +0.4
269,513 + ABZR86_RS19125 0.12 -0.2
269,577 - ABZR86_RS19125 0.17 +0.3
269,687 + ABZR86_RS19125 0.26 +0.8
269,687 + ABZR86_RS19125 0.26 -0.1
269,687 + ABZR86_RS19125 0.26 -0.2
269,688 - ABZR86_RS19125 0.26 +0.9
269,747 + ABZR86_RS19125 0.31 -0.6
269,828 + ABZR86_RS19125 0.37 +0.0
269,829 - ABZR86_RS19125 0.37 +0.3
269,829 - ABZR86_RS19125 0.37 -0.7
269,829 - ABZR86_RS19125 0.37 -0.8
269,870 + ABZR86_RS19125 0.40 +0.6
269,904 + ABZR86_RS19125 0.43 +0.1
269,905 - ABZR86_RS19125 0.43 -0.3
269,956 + ABZR86_RS19125 0.47 +0.8
269,957 - ABZR86_RS19125 0.47 -0.9
270,036 + ABZR86_RS19125 0.53 -0.4
270,037 - ABZR86_RS19125 0.53 -0.3
270,037 - ABZR86_RS19125 0.53 -0.0
270,041 - ABZR86_RS19125 0.54 -0.9
270,113 + ABZR86_RS19125 0.59 -0.8
270,136 + ABZR86_RS19125 0.61 +1.0
270,176 + ABZR86_RS19125 0.64 -0.3
270,177 - ABZR86_RS19125 0.64 +0.3
270,215 + ABZR86_RS19125 0.67 -0.1
270,241 + ABZR86_RS19125 0.69 +0.2
270,241 + ABZR86_RS19125 0.69 -1.1
270,482 + ABZR86_RS19125 0.88 -1.0
270,482 + ABZR86_RS19125 0.88 -0.2
270,482 + ABZR86_RS19125 0.88 -0.6
270,482 + ABZR86_RS19125 0.88 -0.4
270,483 - ABZR86_RS19125 0.88 -1.9
270,483 - ABZR86_RS19125 0.88 +0.4
270,483 - ABZR86_RS19125 0.88 +0.1
270,483 - ABZR86_RS19125 0.88 +0.6
270,582 + -1.3
270,583 - +0.2
270,693 + +0.1
270,703 + -0.1
270,729 + +0.2
270,791 - -2.9
270,832 + +0.0
270,832 + -0.8
270,927 - ABZR86_RS19130 0.16 +0.1
271,177 - ABZR86_RS19130 0.52 +0.6
271,177 - ABZR86_RS19130 0.52 +0.6
271,177 - ABZR86_RS19130 0.52 -0.4
271,220 + ABZR86_RS19130 0.58 -0.5
271,221 - ABZR86_RS19130 0.58 -0.0
271,241 + ABZR86_RS19130 0.61 +0.1
271,241 + ABZR86_RS19130 0.61 -0.2
271,241 + ABZR86_RS19130 0.61 +0.3
271,241 + ABZR86_RS19130 0.61 +0.1
271,241 + ABZR86_RS19130 0.61 -0.9
271,241 + ABZR86_RS19130 0.61 -0.4
271,241 + ABZR86_RS19130 0.61 -0.6
271,241 + ABZR86_RS19130 0.61 +0.2
271,242 - ABZR86_RS19130 0.61 -0.2
271,242 - ABZR86_RS19130 0.61 -0.5
271,242 - ABZR86_RS19130 0.61 -0.6
271,242 - ABZR86_RS19130 0.61 +0.3
271,242 - ABZR86_RS19130 0.61 -0.9
271,242 - ABZR86_RS19130 0.61 +0.7
271,242 - ABZR86_RS19130 0.61 +1.1
271,242 - ABZR86_RS19130 0.61 +0.3
271,242 - ABZR86_RS19130 0.61 +0.1
271,242 - ABZR86_RS19130 0.61 -0.1
271,242 - ABZR86_RS19130 0.61 +0.5
271,242 - ABZR86_RS19130 0.61 -0.4
271,333 + ABZR86_RS19130 0.74 -0.2
271,333 + ABZR86_RS19130 0.74 -0.8
271,334 - ABZR86_RS19130 0.74 -0.0
271,334 - ABZR86_RS19130 0.74 +1.2
271,334 - ABZR86_RS19130 0.74 +0.2
271,336 + ABZR86_RS19130 0.75 -0.0
271,337 - ABZR86_RS19130 0.75 +0.4
271,337 - ABZR86_RS19130 0.75 +0.1
271,370 + ABZR86_RS19130 0.80 +0.2
271,384 + ABZR86_RS19130 0.82 -0.9
271,385 - ABZR86_RS19130 0.82 +1.1
271,465 - -0.3
271,496 + +0.2
271,508 + +0.1
271,508 + -0.3
271,509 - +0.6
271,509 - +0.0
271,516 + -0.8
271,516 + +0.5
271,517 - -0.7

Or see this region's nucleotide sequence