Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18875 and ABZR86_RS18880 are separated by 87 nucleotides ABZR86_RS18880 and ABZR86_RS18885 are separated by 527 nucleotides
ABZR86_RS18875: ABZR86_RS18875 - glycine cleavage system aminomethyltransferase GcvT, at 205,675 to 206,775
_RS18875
ABZR86_RS18880: ABZR86_RS18880 - glycine cleavage system protein GcvH, at 206,863 to 207,258
_RS18880
ABZR86_RS18885: ABZR86_RS18885 - met regulon transcriptional regulator MetJ, at 207,786 to 208,340
_RS18885
Position (kb) 206
207
208 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 205.927 kb on + strand, within ABZR86_RS18875 at 205.928 kb on - strand, within ABZR86_RS18875 at 205.928 kb on - strand, within ABZR86_RS18875 at 205.928 kb on - strand, within ABZR86_RS18875 at 205.979 kb on - strand, within ABZR86_RS18875 at 205.979 kb on - strand, within ABZR86_RS18875 at 206.254 kb on + strand, within ABZR86_RS18875 at 206.255 kb on - strand, within ABZR86_RS18875 at 206.735 kb on - strand at 206.806 kb on + strand at 206.806 kb on + strand at 206.806 kb on + strand at 206.807 kb on - strand at 206.807 kb on - strand at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.986 kb on + strand, within ABZR86_RS18880 at 206.987 kb on - strand, within ABZR86_RS18880 at 207.073 kb on + strand, within ABZR86_RS18880 at 207.073 kb on + strand, within ABZR86_RS18880 at 207.074 kb on - strand, within ABZR86_RS18880 at 207.074 kb on - strand, within ABZR86_RS18880 at 207.074 kb on - strand, within ABZR86_RS18880 at 207.074 kb on - strand, within ABZR86_RS18880 at 207.074 kb on - strand, within ABZR86_RS18880 at 207.559 kb on - strand at 207.613 kb on - strand at 207.752 kb on + strand at 207.768 kb on + strand at 207.813 kb on + strand at 207.813 kb on + strand at 207.814 kb on - strand at 207.863 kb on + strand, within ABZR86_RS18885 at 207.864 kb on - strand, within ABZR86_RS18885 at 207.864 kb on - strand, within ABZR86_RS18885 at 207.880 kb on + strand, within ABZR86_RS18885 at 207.903 kb on - strand, within ABZR86_RS18885 at 207.978 kb on - strand, within ABZR86_RS18885 at 208.019 kb on + strand, within ABZR86_RS18885 at 208.020 kb on - strand, within ABZR86_RS18885 at 208.020 kb on - strand, within ABZR86_RS18885 at 208.020 kb on - strand, within ABZR86_RS18885 at 208.020 kb on - strand, within ABZR86_RS18885
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 205,927 + ABZR86_RS18875 0.23 +0.6 205,928 - ABZR86_RS18875 0.23 -1.2 205,928 - ABZR86_RS18875 0.23 +0.4 205,928 - ABZR86_RS18875 0.23 -0.1 205,979 - ABZR86_RS18875 0.28 +0.6 205,979 - ABZR86_RS18875 0.28 +0.0 206,254 + ABZR86_RS18875 0.53 +1.0 206,255 - ABZR86_RS18875 0.53 +1.4 206,735 - +2.1 206,806 + -1.3 206,806 + -0.4 206,806 + +0.0 206,807 - +0.2 206,807 - -0.2 206,986 + ABZR86_RS18880 0.31 +0.0 206,986 + ABZR86_RS18880 0.31 +1.5 206,986 + ABZR86_RS18880 0.31 -0.6 206,986 + ABZR86_RS18880 0.31 +0.0 206,986 + ABZR86_RS18880 0.31 -0.1 206,986 + ABZR86_RS18880 0.31 +0.3 206,986 + ABZR86_RS18880 0.31 +0.7 206,986 + ABZR86_RS18880 0.31 +0.4 206,986 + ABZR86_RS18880 0.31 +0.0 206,986 + ABZR86_RS18880 0.31 +0.8 206,986 + ABZR86_RS18880 0.31 +0.4 206,986 + ABZR86_RS18880 0.31 -0.2 206,986 + ABZR86_RS18880 0.31 -0.7 206,986 + ABZR86_RS18880 0.31 -0.5 206,987 - ABZR86_RS18880 0.31 +0.5 207,073 + ABZR86_RS18880 0.53 +0.2 207,073 + ABZR86_RS18880 0.53 +0.5 207,074 - ABZR86_RS18880 0.53 +0.6 207,074 - ABZR86_RS18880 0.53 -0.4 207,074 - ABZR86_RS18880 0.53 +0.3 207,074 - ABZR86_RS18880 0.53 +0.3 207,074 - ABZR86_RS18880 0.53 +0.3 207,559 - +1.4 207,613 - +0.2 207,752 + -2.0 207,768 + -0.7 207,813 + +3.0 207,813 + +2.8 207,814 - +3.2 207,863 + ABZR86_RS18885 0.14 +2.6 207,864 - ABZR86_RS18885 0.14 +2.1 207,864 - ABZR86_RS18885 0.14 -1.1 207,880 + ABZR86_RS18885 0.17 +2.1 207,903 - ABZR86_RS18885 0.21 +2.9 207,978 - ABZR86_RS18885 0.35 +2.3 208,019 + ABZR86_RS18885 0.42 +3.1 208,020 - ABZR86_RS18885 0.42 +1.3 208,020 - ABZR86_RS18885 0.42 +2.8 208,020 - ABZR86_RS18885 0.42 +2.0 208,020 - ABZR86_RS18885 0.42 +2.2
Or see this region's nucleotide sequence