Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS09765 and ABZR86_RS09770 are separated by 441 nucleotides ABZR86_RS09770 and ABZR86_RS09775 are separated by 50 nucleotides ABZR86_RS09775 and ABZR86_RS09780 are separated by 68 nucleotides
ABZR86_RS09765: ABZR86_RS09765 - LysR family transcriptional regulator, at 2,169,363 to 2,170,277
_RS09765
ABZR86_RS09770: ABZR86_RS09770 - IS30 family transposase, at 2,170,719 to 2,171,875
_RS09770
ABZR86_RS09775: ABZR86_RS09775 - hypothetical protein, at 2,171,926 to 2,172,243
_RS09775
ABZR86_RS09780: ABZR86_RS09780 - hypothetical protein, at 2,172,312 to 2,172,749
_RS09780
Position (kb)
2170
2171
2172 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2169.833 kb on + strand, within ABZR86_RS09765 at 2169.858 kb on + strand, within ABZR86_RS09765 at 2169.858 kb on + strand, within ABZR86_RS09765 at 2169.858 kb on + strand, within ABZR86_RS09765 at 2169.858 kb on + strand, within ABZR86_RS09765 at 2169.859 kb on - strand, within ABZR86_RS09765 at 2169.859 kb on - strand, within ABZR86_RS09765 at 2169.859 kb on - strand, within ABZR86_RS09765 at 2169.874 kb on - strand, within ABZR86_RS09765 at 2169.943 kb on - strand, within ABZR86_RS09765 at 2169.943 kb on - strand, within ABZR86_RS09765 at 2169.943 kb on - strand, within ABZR86_RS09765 at 2169.943 kb on - strand, within ABZR86_RS09765 at 2169.943 kb on - strand, within ABZR86_RS09765 at 2169.975 kb on + strand, within ABZR86_RS09765 at 2169.975 kb on + strand, within ABZR86_RS09765 at 2169.975 kb on + strand, within ABZR86_RS09765 at 2169.976 kb on - strand, within ABZR86_RS09765 at 2170.003 kb on + strand, within ABZR86_RS09765 at 2170.050 kb on + strand, within ABZR86_RS09765 at 2170.050 kb on + strand, within ABZR86_RS09765 at 2170.050 kb on + strand, within ABZR86_RS09765 at 2170.050 kb on + strand, within ABZR86_RS09765 at 2170.051 kb on - strand, within ABZR86_RS09765 at 2170.051 kb on - strand, within ABZR86_RS09765 at 2170.098 kb on + strand, within ABZR86_RS09765 at 2170.099 kb on - strand, within ABZR86_RS09765 at 2170.099 kb on - strand, within ABZR86_RS09765 at 2170.099 kb on - strand, within ABZR86_RS09765 at 2170.099 kb on - strand, within ABZR86_RS09765 at 2170.099 kb on - strand, within ABZR86_RS09765 at 2170.099 kb on - strand, within ABZR86_RS09765 at 2170.099 kb on - strand, within ABZR86_RS09765 at 2170.177 kb on - strand, within ABZR86_RS09765 at 2170.204 kb on + strand at 2170.204 kb on + strand at 2170.204 kb on + strand at 2170.204 kb on + strand at 2170.205 kb on - strand at 2170.205 kb on - strand at 2170.205 kb on - strand at 2170.205 kb on - strand at 2170.289 kb on + strand at 2170.348 kb on + strand at 2170.348 kb on + strand at 2170.348 kb on + strand at 2170.348 kb on + strand at 2170.348 kb on + strand at 2170.348 kb on + strand at 2170.349 kb on - strand at 2170.349 kb on - strand at 2170.349 kb on - strand at 2170.349 kb on - strand at 2170.349 kb on - strand at 2170.352 kb on + strand at 2170.352 kb on + strand at 2170.352 kb on + strand at 2170.352 kb on + strand at 2170.352 kb on + strand at 2170.353 kb on - strand at 2170.353 kb on - strand at 2170.353 kb on - strand at 2170.353 kb on - strand at 2170.353 kb on - strand at 2170.353 kb on - strand at 2170.353 kb on - strand at 2170.353 kb on - strand at 2170.353 kb on - strand at 2170.353 kb on - strand at 2170.353 kb on - strand at 2170.409 kb on + strand at 2170.410 kb on - strand at 2170.410 kb on - strand at 2170.410 kb on - strand at 2170.410 kb on - strand at 2170.410 kb on - strand at 2170.410 kb on - strand at 2170.410 kb on - strand at 2170.411 kb on + strand at 2170.411 kb on + strand at 2170.411 kb on + strand at 2170.411 kb on + strand at 2170.603 kb on + strand at 2170.603 kb on + strand at 2170.604 kb on - strand at 2170.611 kb on + strand at 2170.611 kb on + strand at 2170.611 kb on + strand at 2170.611 kb on + strand at 2170.612 kb on - strand at 2170.612 kb on - strand at 2170.612 kb on - strand at 2170.612 kb on - strand at 2170.612 kb on - strand at 2170.612 kb on - strand at 2170.629 kb on + strand at 2170.691 kb on - strand at 2170.691 kb on - strand at 2170.691 kb on - strand at 2170.691 kb on - strand at 2170.693 kb on - strand at 2170.693 kb on - strand at 2171.925 kb on + strand at 2171.926 kb on - strand at 2171.977 kb on + strand, within ABZR86_RS09775 at 2171.977 kb on + strand, within ABZR86_RS09775 at 2171.978 kb on - strand, within ABZR86_RS09775 at 2172.045 kb on + strand, within ABZR86_RS09775 at 2172.046 kb on - strand, within ABZR86_RS09775 at 2172.071 kb on + strand, within ABZR86_RS09775 at 2172.072 kb on - strand, within ABZR86_RS09775 at 2172.072 kb on - strand, within ABZR86_RS09775 at 2172.072 kb on - strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.187 kb on - strand, within ABZR86_RS09775 at 2172.187 kb on - strand, within ABZR86_RS09775 at 2172.187 kb on - strand, within ABZR86_RS09775 at 2172.187 kb on - strand, within ABZR86_RS09775 at 2172.190 kb on + strand, within ABZR86_RS09775 at 2172.224 kb on + strand at 2172.225 kb on - strand at 2172.225 kb on - strand at 2172.241 kb on + strand at 2172.241 kb on + strand at 2172.241 kb on + strand at 2172.242 kb on - strand at 2172.254 kb on + strand at 2172.255 kb on - strand at 2172.341 kb on + strand at 2172.342 kb on - strand at 2172.342 kb on - strand at 2172.342 kb on - strand at 2172.479 kb on - strand, within ABZR86_RS09780 at 2172.479 kb on - strand, within ABZR86_RS09780 at 2172.479 kb on - strand, within ABZR86_RS09780 at 2172.479 kb on - strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.538 kb on - strand, within ABZR86_RS09780 at 2172.538 kb on - strand, within ABZR86_RS09780 at 2172.596 kb on - strand, within ABZR86_RS09780 at 2172.596 kb on - strand, within ABZR86_RS09780 at 2172.596 kb on - strand, within ABZR86_RS09780 at 2172.596 kb on - strand, within ABZR86_RS09780 at 2172.598 kb on + strand, within ABZR86_RS09780 at 2172.599 kb on - strand, within ABZR86_RS09780 at 2172.633 kb on + strand, within ABZR86_RS09780 at 2172.633 kb on + strand, within ABZR86_RS09780 at 2172.633 kb on + strand, within ABZR86_RS09780 at 2172.634 kb on - strand, within ABZR86_RS09780 at 2172.634 kb on - strand, within ABZR86_RS09780 at 2172.718 kb on + strand at 2172.718 kb on + strand at 2172.747 kb on + strand at 2172.747 kb on + strand at 2172.748 kb on - strand at 2172.787 kb on + strand at 2172.787 kb on + strand at 2172.787 kb on + strand at 2172.787 kb on + strand at 2172.787 kb on + strand at 2172.788 kb on - strand at 2172.788 kb on - strand at 2172.798 kb on - strand at 2172.812 kb on + strand at 2172.837 kb on + strand at 2172.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 2,169,833 + ABZR86_RS09765 0.51 -0.4 2,169,858 + ABZR86_RS09765 0.54 +0.2 2,169,858 + ABZR86_RS09765 0.54 -1.7 2,169,858 + ABZR86_RS09765 0.54 -0.2 2,169,858 + ABZR86_RS09765 0.54 -0.5 2,169,859 - ABZR86_RS09765 0.54 +0.2 2,169,859 - ABZR86_RS09765 0.54 -0.1 2,169,859 - ABZR86_RS09765 0.54 +0.2 2,169,874 - ABZR86_RS09765 0.56 +1.0 2,169,943 - ABZR86_RS09765 0.63 -0.0 2,169,943 - ABZR86_RS09765 0.63 +0.1 2,169,943 - ABZR86_RS09765 0.63 -0.1 2,169,943 - ABZR86_RS09765 0.63 +0.0 2,169,943 - ABZR86_RS09765 0.63 -0.1 2,169,975 + ABZR86_RS09765 0.67 -1.1 2,169,975 + ABZR86_RS09765 0.67 -0.4 2,169,975 + ABZR86_RS09765 0.67 +0.1 2,169,976 - ABZR86_RS09765 0.67 +0.3 2,170,003 + ABZR86_RS09765 0.70 +0.0 2,170,050 + ABZR86_RS09765 0.75 +0.3 2,170,050 + ABZR86_RS09765 0.75 +0.2 2,170,050 + ABZR86_RS09765 0.75 -0.4 2,170,050 + ABZR86_RS09765 0.75 +0.3 2,170,051 - ABZR86_RS09765 0.75 +0.6 2,170,051 - ABZR86_RS09765 0.75 -0.5 2,170,098 + ABZR86_RS09765 0.80 -0.9 2,170,099 - ABZR86_RS09765 0.80 +0.3 2,170,099 - ABZR86_RS09765 0.80 +0.1 2,170,099 - ABZR86_RS09765 0.80 +0.2 2,170,099 - ABZR86_RS09765 0.80 -0.1 2,170,099 - ABZR86_RS09765 0.80 -0.6 2,170,099 - ABZR86_RS09765 0.80 -0.4 2,170,099 - ABZR86_RS09765 0.80 -0.6 2,170,177 - ABZR86_RS09765 0.89 -0.7 2,170,204 + +0.1 2,170,204 + +0.8 2,170,204 + -0.4 2,170,204 + +0.2 2,170,205 - -0.5 2,170,205 - -0.9 2,170,205 - -0.1 2,170,205 - -0.7 2,170,289 + +0.0 2,170,348 + +0.4 2,170,348 + -1.3 2,170,348 + -0.4 2,170,348 + -0.9 2,170,348 + -0.3 2,170,348 + -0.0 2,170,349 - -0.4 2,170,349 - +0.3 2,170,349 - -0.4 2,170,349 - -0.5 2,170,349 - -1.0 2,170,352 + -1.1 2,170,352 + -0.4 2,170,352 + -0.1 2,170,352 + +0.4 2,170,352 + +0.4 2,170,353 - -0.9 2,170,353 - -0.4 2,170,353 - -1.1 2,170,353 - +0.8 2,170,353 - -0.4 2,170,353 - +2.6 2,170,353 - +0.1 2,170,353 - +0.5 2,170,353 - +0.5 2,170,353 - -0.6 2,170,353 - +1.0 2,170,409 + -0.7 2,170,410 - -0.5 2,170,410 - -0.1 2,170,410 - +0.6 2,170,410 - -0.2 2,170,410 - -1.1 2,170,410 - +0.4 2,170,410 - -0.0 2,170,411 + +0.5 2,170,411 + +1.2 2,170,411 + +0.6 2,170,411 + +0.2 2,170,603 + +0.8 2,170,603 + -1.0 2,170,604 - +0.2 2,170,611 + +0.6 2,170,611 + -1.8 2,170,611 + -0.8 2,170,611 + +0.0 2,170,612 - +0.0 2,170,612 - -0.1 2,170,612 - -0.0 2,170,612 - -0.0 2,170,612 - -0.9 2,170,612 - +0.3 2,170,629 + +0.6 2,170,691 - +1.0 2,170,691 - +0.5 2,170,691 - -0.1 2,170,691 - +0.8 2,170,693 - -0.1 2,170,693 - -1.1 2,171,925 + -0.2 2,171,926 - -0.0 2,171,977 + ABZR86_RS09775 0.16 +0.1 2,171,977 + ABZR86_RS09775 0.16 -0.6 2,171,978 - ABZR86_RS09775 0.16 +0.1 2,172,045 + ABZR86_RS09775 0.37 +0.3 2,172,046 - ABZR86_RS09775 0.38 -1.0 2,172,071 + ABZR86_RS09775 0.46 -0.0 2,172,072 - ABZR86_RS09775 0.46 -0.6 2,172,072 - ABZR86_RS09775 0.46 +0.1 2,172,072 - ABZR86_RS09775 0.46 +0.1 2,172,186 + ABZR86_RS09775 0.82 +0.5 2,172,186 + ABZR86_RS09775 0.82 +0.7 2,172,186 + ABZR86_RS09775 0.82 +1.0 2,172,186 + ABZR86_RS09775 0.82 -0.0 2,172,186 + ABZR86_RS09775 0.82 +0.2 2,172,186 + ABZR86_RS09775 0.82 -0.0 2,172,186 + ABZR86_RS09775 0.82 +0.4 2,172,187 - ABZR86_RS09775 0.82 -0.2 2,172,187 - ABZR86_RS09775 0.82 -0.1 2,172,187 - ABZR86_RS09775 0.82 +0.6 2,172,187 - ABZR86_RS09775 0.82 -0.8 2,172,190 + ABZR86_RS09775 0.83 +0.9 2,172,224 + +0.4 2,172,225 - +0.1 2,172,225 - -0.3 2,172,241 + +2.0 2,172,241 + -0.0 2,172,241 + -0.5 2,172,242 - +0.3 2,172,254 + -0.3 2,172,255 - -1.0 2,172,341 + -0.0 2,172,342 - -0.4 2,172,342 - -1.2 2,172,342 - -0.9 2,172,479 - ABZR86_RS09780 0.38 +1.0 2,172,479 - ABZR86_RS09780 0.38 +0.1 2,172,479 - ABZR86_RS09780 0.38 -0.0 2,172,479 - ABZR86_RS09780 0.38 -0.1 2,172,537 + ABZR86_RS09780 0.51 +1.4 2,172,537 + ABZR86_RS09780 0.51 +0.2 2,172,537 + ABZR86_RS09780 0.51 +0.3 2,172,537 + ABZR86_RS09780 0.51 +0.2 2,172,537 + ABZR86_RS09780 0.51 -1.2 2,172,537 + ABZR86_RS09780 0.51 +0.0 2,172,537 + ABZR86_RS09780 0.51 +0.5 2,172,537 + ABZR86_RS09780 0.51 -0.4 2,172,538 - ABZR86_RS09780 0.52 +0.0 2,172,538 - ABZR86_RS09780 0.52 -0.0 2,172,596 - ABZR86_RS09780 0.65 +0.1 2,172,596 - ABZR86_RS09780 0.65 +0.2 2,172,596 - ABZR86_RS09780 0.65 +0.6 2,172,596 - ABZR86_RS09780 0.65 -1.6 2,172,598 + ABZR86_RS09780 0.65 +0.7 2,172,599 - ABZR86_RS09780 0.66 -0.0 2,172,633 + ABZR86_RS09780 0.73 +0.1 2,172,633 + ABZR86_RS09780 0.73 -0.0 2,172,633 + ABZR86_RS09780 0.73 -0.6 2,172,634 - ABZR86_RS09780 0.74 -0.7 2,172,634 - ABZR86_RS09780 0.74 +0.1 2,172,718 + -0.0 2,172,718 + +0.4 2,172,747 + +0.5 2,172,747 + +0.7 2,172,748 - -0.5 2,172,787 + -0.4 2,172,787 + -0.8 2,172,787 + +1.0 2,172,787 + -0.9 2,172,787 + -0.2 2,172,788 - -1.6 2,172,788 - -0.2 2,172,798 - +0.4 2,172,812 + +0.2 2,172,837 + -0.7 2,172,838 - +0.3
Or see this region's nucleotide sequence