Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08780

Experiment: L-Alanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS08770 and ABZR86_RS08775 overlap by 4 nucleotidesABZR86_RS08775 and ABZR86_RS08780 overlap by 4 nucleotidesABZR86_RS08780 and ABZR86_RS08785 are separated by 57 nucleotidesABZR86_RS08785 and ABZR86_RS08790 overlap by 8 nucleotides ABZR86_RS08770: ABZR86_RS08770 - squalene/phytoene synthase family protein, at 1,962,920 to 1,963,771 _RS08770 ABZR86_RS08775: ABZR86_RS08775 - HAD-IA family hydrolase, at 1,963,768 to 1,964,448 _RS08775 ABZR86_RS08780: ABZR86_RS08780 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 1,964,445 to 1,965,152 _RS08780 ABZR86_RS08785: ABZR86_RS08785 - YciI family protein, at 1,965,210 to 1,965,482 _RS08785 ABZR86_RS08790: ABZR86_RS08790 - TRZ/ATZ family hydrolase, at 1,965,475 to 1,966,815 _RS08790 Position (kb) 1964 1965 1966Strain fitness (log2 ratio) -1 0 1at 1963.735 kb on - strandat 1963.893 kb on - strand, within ABZR86_RS08775at 1964.205 kb on - strand, within ABZR86_RS08775at 1964.205 kb on - strand, within ABZR86_RS08775at 1964.217 kb on - strand, within ABZR86_RS08775at 1965.160 kb on - strandat 1965.175 kb on - strandat 1965.175 kb on - strandat 1965.175 kb on - strandat 1965.175 kb on - strandat 1965.175 kb on - strandat 1965.175 kb on - strandat 1965.175 kb on - strandat 1965.206 kb on + strandat 1965.206 kb on + strandat 1965.207 kb on - strandat 1965.207 kb on - strandat 1965.207 kb on - strandat 1965.207 kb on - strandat 1965.207 kb on - strandat 1965.257 kb on + strand, within ABZR86_RS08785at 1965.257 kb on + strand, within ABZR86_RS08785at 1965.257 kb on + strand, within ABZR86_RS08785at 1965.258 kb on - strand, within ABZR86_RS08785at 1965.258 kb on - strand, within ABZR86_RS08785at 1965.258 kb on - strand, within ABZR86_RS08785at 1965.259 kb on + strand, within ABZR86_RS08785at 1965.259 kb on + strand, within ABZR86_RS08785at 1965.259 kb on + strand, within ABZR86_RS08785at 1965.259 kb on + strand, within ABZR86_RS08785at 1965.259 kb on + strand, within ABZR86_RS08785at 1965.259 kb on + strand, within ABZR86_RS08785at 1965.260 kb on - strand, within ABZR86_RS08785at 1965.260 kb on - strand, within ABZR86_RS08785at 1965.260 kb on - strand, within ABZR86_RS08785at 1965.260 kb on - strand, within ABZR86_RS08785at 1965.281 kb on + strand, within ABZR86_RS08785at 1965.282 kb on - strand, within ABZR86_RS08785at 1965.282 kb on - strand, within ABZR86_RS08785at 1965.319 kb on + strand, within ABZR86_RS08785at 1965.320 kb on - strand, within ABZR86_RS08785at 1965.320 kb on - strand, within ABZR86_RS08785at 1965.454 kb on + strand, within ABZR86_RS08785at 1965.455 kb on - strandat 1965.455 kb on - strandat 1965.626 kb on + strand, within ABZR86_RS08790at 1965.627 kb on - strand, within ABZR86_RS08790at 1965.627 kb on - strand, within ABZR86_RS08790at 1965.627 kb on - strand, within ABZR86_RS08790at 1965.627 kb on - strand, within ABZR86_RS08790at 1965.627 kb on - strand, within ABZR86_RS08790at 1965.627 kb on - strand, within ABZR86_RS08790at 1965.782 kb on + strand, within ABZR86_RS08790at 1965.783 kb on - strand, within ABZR86_RS08790

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
remove
1,963,735 - +1.2
1,963,893 - ABZR86_RS08775 0.18 -0.6
1,964,205 - ABZR86_RS08775 0.64 -0.6
1,964,205 - ABZR86_RS08775 0.64 -1.5
1,964,217 - ABZR86_RS08775 0.66 -0.8
1,965,160 - -0.1
1,965,175 - +0.4
1,965,175 - +0.2
1,965,175 - -1.0
1,965,175 - +0.2
1,965,175 - +0.3
1,965,175 - +0.7
1,965,175 - -1.1
1,965,206 + +0.9
1,965,206 + -0.4
1,965,207 - +0.5
1,965,207 - +0.9
1,965,207 - +0.7
1,965,207 - -0.1
1,965,207 - -1.1
1,965,257 + ABZR86_RS08785 0.17 +0.5
1,965,257 + ABZR86_RS08785 0.17 +0.3
1,965,257 + ABZR86_RS08785 0.17 -1.0
1,965,258 - ABZR86_RS08785 0.18 -0.0
1,965,258 - ABZR86_RS08785 0.18 +0.1
1,965,258 - ABZR86_RS08785 0.18 -0.9
1,965,259 + ABZR86_RS08785 0.18 -0.7
1,965,259 + ABZR86_RS08785 0.18 -0.2
1,965,259 + ABZR86_RS08785 0.18 +0.3
1,965,259 + ABZR86_RS08785 0.18 +0.6
1,965,259 + ABZR86_RS08785 0.18 -1.0
1,965,259 + ABZR86_RS08785 0.18 -0.6
1,965,260 - ABZR86_RS08785 0.18 -0.6
1,965,260 - ABZR86_RS08785 0.18 +0.0
1,965,260 - ABZR86_RS08785 0.18 -0.4
1,965,260 - ABZR86_RS08785 0.18 +0.4
1,965,281 + ABZR86_RS08785 0.26 -0.3
1,965,282 - ABZR86_RS08785 0.26 +0.6
1,965,282 - ABZR86_RS08785 0.26 -0.6
1,965,319 + ABZR86_RS08785 0.40 +0.2
1,965,320 - ABZR86_RS08785 0.40 +0.0
1,965,320 - ABZR86_RS08785 0.40 +1.5
1,965,454 + ABZR86_RS08785 0.89 -0.2
1,965,455 - +0.4
1,965,455 - -0.3
1,965,626 + ABZR86_RS08790 0.11 +0.8
1,965,627 - ABZR86_RS08790 0.11 +1.1
1,965,627 - ABZR86_RS08790 0.11 +1.3
1,965,627 - ABZR86_RS08790 0.11 -0.3
1,965,627 - ABZR86_RS08790 0.11 +0.3
1,965,627 - ABZR86_RS08790 0.11 +0.8
1,965,627 - ABZR86_RS08790 0.11 +1.2
1,965,782 + ABZR86_RS08790 0.23 -0.1
1,965,783 - ABZR86_RS08790 0.23 +0.4

Or see this region's nucleotide sequence