Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02510 and ABZR86_RS02515 are separated by 14 nucleotides ABZR86_RS02515 and ABZR86_RS02520 overlap by 4 nucleotides ABZR86_RS02520 and ABZR86_RS02525 overlap by 4 nucleotides ABZR86_RS02525 and ABZR86_RS02530 overlap by 1 nucleotides
ABZR86_RS02510: ABZR86_RS02510 - DNA cytosine methyltransferase, at 513,391 to 515,451
_RS02510
ABZR86_RS02515: ABZR86_RS02515 - hypothetical protein, at 515,466 to 515,873
_RS02515
ABZR86_RS02520: ABZR86_RS02520 - DEAD/DEAH box helicase, at 515,870 to 517,621
_RS02520
ABZR86_RS02525: ABZR86_RS02525 - hypothetical protein, at 517,618 to 518,376
_RS02525
ABZR86_RS02530: ABZR86_RS02530 - hypothetical protein, at 518,376 to 518,795
_RS02530
Position (kb) 515
516
517
518 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 515.227 kb on + strand, within ABZR86_RS02510 at 515.237 kb on + strand, within ABZR86_RS02510 at 515.237 kb on + strand, within ABZR86_RS02510 at 515.237 kb on + strand, within ABZR86_RS02510 at 515.237 kb on + strand, within ABZR86_RS02510 at 515.238 kb on - strand, within ABZR86_RS02510 at 515.242 kb on - strand, within ABZR86_RS02510 at 515.242 kb on - strand, within ABZR86_RS02510 at 515.242 kb on - strand, within ABZR86_RS02510 at 515.302 kb on + strand at 515.739 kb on + strand, within ABZR86_RS02515 at 515.739 kb on + strand, within ABZR86_RS02515 at 515.740 kb on - strand, within ABZR86_RS02515 at 515.740 kb on - strand, within ABZR86_RS02515 at 515.740 kb on - strand, within ABZR86_RS02515 at 515.740 kb on - strand, within ABZR86_RS02515 at 515.876 kb on + strand at 515.876 kb on + strand at 515.877 kb on - strand at 515.891 kb on + strand at 515.991 kb on + strand at 515.991 kb on + strand at 515.991 kb on + strand at 515.992 kb on - strand at 515.992 kb on - strand at 516.153 kb on + strand, within ABZR86_RS02520 at 516.153 kb on + strand, within ABZR86_RS02520 at 516.154 kb on - strand, within ABZR86_RS02520 at 516.189 kb on - strand, within ABZR86_RS02520 at 516.450 kb on + strand, within ABZR86_RS02520 at 516.450 kb on + strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.485 kb on + strand, within ABZR86_RS02520 at 516.485 kb on + strand, within ABZR86_RS02520 at 516.486 kb on - strand, within ABZR86_RS02520 at 516.584 kb on + strand, within ABZR86_RS02520 at 516.584 kb on + strand, within ABZR86_RS02520 at 516.584 kb on + strand, within ABZR86_RS02520 at 516.585 kb on - strand, within ABZR86_RS02520 at 516.600 kb on - strand, within ABZR86_RS02520 at 516.625 kb on + strand, within ABZR86_RS02520 at 516.625 kb on + strand, within ABZR86_RS02520 at 516.626 kb on - strand, within ABZR86_RS02520 at 516.626 kb on - strand, within ABZR86_RS02520 at 516.650 kb on + strand, within ABZR86_RS02520 at 516.650 kb on + strand, within ABZR86_RS02520 at 516.651 kb on - strand, within ABZR86_RS02520 at 516.656 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.794 kb on + strand, within ABZR86_RS02520 at 516.794 kb on + strand, within ABZR86_RS02520 at 516.794 kb on + strand, within ABZR86_RS02520 at 516.795 kb on - strand, within ABZR86_RS02520 at 517.118 kb on + strand, within ABZR86_RS02520 at 517.118 kb on + strand, within ABZR86_RS02520 at 517.118 kb on + strand, within ABZR86_RS02520 at 517.118 kb on + strand, within ABZR86_RS02520 at 517.119 kb on - strand, within ABZR86_RS02520 at 517.119 kb on - strand, within ABZR86_RS02520 at 517.119 kb on - strand, within ABZR86_RS02520 at 517.163 kb on + strand, within ABZR86_RS02520 at 517.163 kb on + strand, within ABZR86_RS02520 at 517.163 kb on + strand, within ABZR86_RS02520 at 517.388 kb on + strand, within ABZR86_RS02520 at 517.388 kb on + strand, within ABZR86_RS02520 at 517.388 kb on + strand, within ABZR86_RS02520 at 517.628 kb on + strand at 517.628 kb on + strand at 517.684 kb on + strand at 517.684 kb on + strand at 517.685 kb on - strand at 517.685 kb on - strand at 517.792 kb on + strand, within ABZR86_RS02525 at 517.792 kb on + strand, within ABZR86_RS02525 at 517.793 kb on - strand, within ABZR86_RS02525 at 517.981 kb on - strand, within ABZR86_RS02525 at 518.016 kb on - strand, within ABZR86_RS02525 at 518.016 kb on - strand, within ABZR86_RS02525 at 518.132 kb on - strand, within ABZR86_RS02525 at 518.132 kb on - strand, within ABZR86_RS02525 at 518.165 kb on - strand, within ABZR86_RS02525 at 518.165 kb on - strand, within ABZR86_RS02525 at 518.375 kb on - strand at 518.394 kb on + strand at 518.487 kb on + strand, within ABZR86_RS02530 at 518.488 kb on - strand, within ABZR86_RS02530 at 518.488 kb on - strand, within ABZR86_RS02530 at 518.535 kb on + strand, within ABZR86_RS02530 at 518.535 kb on + strand, within ABZR86_RS02530 at 518.604 kb on + strand, within ABZR86_RS02530 at 518.605 kb on - strand, within ABZR86_RS02530 at 518.605 kb on - strand, within ABZR86_RS02530
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 515,227 + ABZR86_RS02510 0.89 +0.3 515,237 + ABZR86_RS02510 0.90 -0.4 515,237 + ABZR86_RS02510 0.90 -0.2 515,237 + ABZR86_RS02510 0.90 -0.7 515,237 + ABZR86_RS02510 0.90 -0.3 515,238 - ABZR86_RS02510 0.90 -0.7 515,242 - ABZR86_RS02510 0.90 +0.3 515,242 - ABZR86_RS02510 0.90 -0.3 515,242 - ABZR86_RS02510 0.90 +0.4 515,302 + -0.3 515,739 + ABZR86_RS02515 0.67 -3.7 515,739 + ABZR86_RS02515 0.67 -0.5 515,740 - ABZR86_RS02515 0.67 -0.4 515,740 - ABZR86_RS02515 0.67 -0.1 515,740 - ABZR86_RS02515 0.67 -0.2 515,740 - ABZR86_RS02515 0.67 -1.5 515,876 + +0.2 515,876 + +0.3 515,877 - +0.0 515,891 + -0.6 515,991 + +0.5 515,991 + -1.4 515,991 + +0.9 515,992 - +0.5 515,992 - -0.2 516,153 + ABZR86_RS02520 0.16 -1.6 516,153 + ABZR86_RS02520 0.16 -2.7 516,154 - ABZR86_RS02520 0.16 +0.1 516,189 - ABZR86_RS02520 0.18 -0.4 516,450 + ABZR86_RS02520 0.33 +1.6 516,450 + ABZR86_RS02520 0.33 +0.2 516,451 - ABZR86_RS02520 0.33 -0.1 516,451 - ABZR86_RS02520 0.33 +0.3 516,451 - ABZR86_RS02520 0.33 +1.0 516,451 - ABZR86_RS02520 0.33 +0.1 516,451 - ABZR86_RS02520 0.33 +0.4 516,451 - ABZR86_RS02520 0.33 -1.2 516,485 + ABZR86_RS02520 0.35 -0.0 516,485 + ABZR86_RS02520 0.35 +0.7 516,486 - ABZR86_RS02520 0.35 +0.6 516,584 + ABZR86_RS02520 0.41 +0.3 516,584 + ABZR86_RS02520 0.41 -0.7 516,584 + ABZR86_RS02520 0.41 -0.6 516,585 - ABZR86_RS02520 0.41 +0.0 516,600 - ABZR86_RS02520 0.42 -1.5 516,625 + ABZR86_RS02520 0.43 +0.0 516,625 + ABZR86_RS02520 0.43 -0.2 516,626 - ABZR86_RS02520 0.43 +0.5 516,626 - ABZR86_RS02520 0.43 +0.1 516,650 + ABZR86_RS02520 0.45 +0.3 516,650 + ABZR86_RS02520 0.45 -0.8 516,651 - ABZR86_RS02520 0.45 +0.0 516,656 + ABZR86_RS02520 0.45 +0.8 516,713 + ABZR86_RS02520 0.48 -0.3 516,713 + ABZR86_RS02520 0.48 +0.2 516,713 + ABZR86_RS02520 0.48 +0.4 516,713 + ABZR86_RS02520 0.48 -0.3 516,714 - ABZR86_RS02520 0.48 +0.6 516,714 - ABZR86_RS02520 0.48 -0.2 516,714 - ABZR86_RS02520 0.48 +0.5 516,714 - ABZR86_RS02520 0.48 -1.9 516,714 - ABZR86_RS02520 0.48 -0.2 516,714 - ABZR86_RS02520 0.48 +1.1 516,794 + ABZR86_RS02520 0.53 -0.0 516,794 + ABZR86_RS02520 0.53 -0.0 516,794 + ABZR86_RS02520 0.53 -0.1 516,795 - ABZR86_RS02520 0.53 -0.3 517,118 + ABZR86_RS02520 0.71 +0.1 517,118 + ABZR86_RS02520 0.71 -0.8 517,118 + ABZR86_RS02520 0.71 +0.9 517,118 + ABZR86_RS02520 0.71 -0.5 517,119 - ABZR86_RS02520 0.71 -0.2 517,119 - ABZR86_RS02520 0.71 +0.1 517,119 - ABZR86_RS02520 0.71 +0.7 517,163 + ABZR86_RS02520 0.74 -0.8 517,163 + ABZR86_RS02520 0.74 +1.0 517,163 + ABZR86_RS02520 0.74 +0.3 517,388 + ABZR86_RS02520 0.87 -0.9 517,388 + ABZR86_RS02520 0.87 -0.9 517,388 + ABZR86_RS02520 0.87 -1.5 517,628 + -0.1 517,628 + +0.1 517,684 + -0.3 517,684 + +0.1 517,685 - -0.1 517,685 - -0.5 517,792 + ABZR86_RS02525 0.23 +1.0 517,792 + ABZR86_RS02525 0.23 -1.6 517,793 - ABZR86_RS02525 0.23 -0.4 517,981 - ABZR86_RS02525 0.48 +0.2 518,016 - ABZR86_RS02525 0.52 +1.3 518,016 - ABZR86_RS02525 0.52 -0.0 518,132 - ABZR86_RS02525 0.68 -0.2 518,132 - ABZR86_RS02525 0.68 +0.6 518,165 - ABZR86_RS02525 0.72 -0.3 518,165 - ABZR86_RS02525 0.72 -0.1 518,375 - -0.3 518,394 + -3.2 518,487 + ABZR86_RS02530 0.26 -4.7 518,488 - ABZR86_RS02530 0.27 -0.4 518,488 - ABZR86_RS02530 0.27 +0.5 518,535 + ABZR86_RS02530 0.38 -3.7 518,535 + ABZR86_RS02530 0.38 -3.4 518,604 + ABZR86_RS02530 0.54 -2.6 518,605 - ABZR86_RS02530 0.55 -0.3 518,605 - ABZR86_RS02530 0.55 +0.0
Or see this region's nucleotide sequence