Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01930 and ABZR86_RS01935 are separated by 1 nucleotides ABZR86_RS01935 and ABZR86_RS01940 are separated by 131 nucleotides ABZR86_RS01940 and ABZR86_RS01945 are separated by 22 nucleotides ABZR86_RS01945 and ABZR86_RS01950 are separated by 13 nucleotides ABZR86_RS01950 and ABZR86_RS01955 are separated by 165 nucleotides
ABZR86_RS01930: ABZR86_RS01930 - hypothetical protein, at 419,677 to 420,162
_RS01930
ABZR86_RS01935: ABZR86_RS01935 - SDR family oxidoreductase, at 420,164 to 420,976
_RS01935
ABZR86_RS01940: ABZR86_RS01940 - triose-phosphate isomerase, at 421,108 to 421,857
_RS01940
ABZR86_RS01945: ABZR86_RS01945 - preprotein translocase subunit SecG, at 421,880 to 422,335
_RS01945
ABZR86_RS01950: ABZR86_RS01950 - tRNA-Leu, at 422,349 to 422,433
_RS01950
ABZR86_RS01955: ABZR86_RS01955 - integrase arm-type DNA-binding domain-containing protein, at 422,599 to 423,900
_RS01955
Position (kb) 421
422 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 420.139 kb on - strand at 420.144 kb on + strand at 420.144 kb on + strand at 420.144 kb on + strand at 420.145 kb on - strand at 420.145 kb on - strand at 420.145 kb on - strand at 420.145 kb on - strand at 420.412 kb on + strand, within ABZR86_RS01935 at 420.413 kb on - strand, within ABZR86_RS01935 at 420.492 kb on + strand, within ABZR86_RS01935 at 420.492 kb on + strand, within ABZR86_RS01935 at 420.492 kb on + strand, within ABZR86_RS01935 at 420.492 kb on + strand, within ABZR86_RS01935 at 420.492 kb on + strand, within ABZR86_RS01935 at 420.493 kb on - strand, within ABZR86_RS01935 at 420.493 kb on - strand, within ABZR86_RS01935 at 420.493 kb on - strand, within ABZR86_RS01935 at 420.493 kb on - strand, within ABZR86_RS01935 at 420.493 kb on - strand, within ABZR86_RS01935 at 420.511 kb on - strand, within ABZR86_RS01935 at 420.511 kb on - strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 421.046 kb on + strand at 421.047 kb on - strand at 421.047 kb on - strand at 421.074 kb on - strand at 422.096 kb on + strand, within ABZR86_RS01945 at 422.096 kb on + strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.333 kb on + strand at 422.333 kb on + strand at 422.333 kb on + strand at 422.333 kb on + strand at 422.333 kb on + strand at 422.486 kb on + strand at 422.599 kb on - strand at 422.609 kb on + strand at 422.609 kb on + strand at 422.610 kb on - strand at 422.622 kb on + strand at 422.623 kb on - strand at 422.665 kb on + strand at 422.665 kb on + strand at 422.665 kb on + strand at 422.697 kb on - strand at 422.697 kb on - strand at 422.718 kb on + strand at 422.719 kb on - strand at 422.719 kb on - strand at 422.831 kb on + strand, within ABZR86_RS01955 at 422.831 kb on + strand, within ABZR86_RS01955 at 422.832 kb on - strand, within ABZR86_RS01955 at 422.832 kb on - strand, within ABZR86_RS01955
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 420,139 - -0.0 420,144 + -0.2 420,144 + +0.1 420,144 + -0.2 420,145 - +0.3 420,145 - -0.1 420,145 - -0.8 420,145 - -1.2 420,412 + ABZR86_RS01935 0.31 +0.7 420,413 - ABZR86_RS01935 0.31 +0.0 420,492 + ABZR86_RS01935 0.40 -0.4 420,492 + ABZR86_RS01935 0.40 +0.5 420,492 + ABZR86_RS01935 0.40 -0.6 420,492 + ABZR86_RS01935 0.40 -0.6 420,492 + ABZR86_RS01935 0.40 +0.1 420,493 - ABZR86_RS01935 0.40 +0.6 420,493 - ABZR86_RS01935 0.40 +0.1 420,493 - ABZR86_RS01935 0.40 +0.1 420,493 - ABZR86_RS01935 0.40 -0.1 420,493 - ABZR86_RS01935 0.40 +0.1 420,511 - ABZR86_RS01935 0.43 -0.8 420,511 - ABZR86_RS01935 0.43 -0.1 420,517 + ABZR86_RS01935 0.43 -0.2 420,517 + ABZR86_RS01935 0.43 +0.1 420,517 + ABZR86_RS01935 0.43 +0.2 420,517 + ABZR86_RS01935 0.43 -0.2 420,517 + ABZR86_RS01935 0.43 +0.2 420,517 + ABZR86_RS01935 0.43 -0.5 420,517 + ABZR86_RS01935 0.43 +0.6 420,517 + ABZR86_RS01935 0.43 -0.0 420,517 + ABZR86_RS01935 0.43 +0.3 420,517 + ABZR86_RS01935 0.43 -1.3 420,517 + ABZR86_RS01935 0.43 +1.1 420,518 - ABZR86_RS01935 0.44 -0.4 420,518 - ABZR86_RS01935 0.44 +0.1 420,518 - ABZR86_RS01935 0.44 -0.0 420,518 - ABZR86_RS01935 0.44 +0.6 420,518 - ABZR86_RS01935 0.44 -0.5 420,518 - ABZR86_RS01935 0.44 -0.3 420,518 - ABZR86_RS01935 0.44 -0.8 420,518 - ABZR86_RS01935 0.44 -0.3 420,518 - ABZR86_RS01935 0.44 -0.1 420,518 - ABZR86_RS01935 0.44 -0.0 421,046 + +0.3 421,047 - +0.5 421,047 - +0.4 421,074 - +0.1 422,096 + ABZR86_RS01945 0.47 -0.2 422,096 + ABZR86_RS01945 0.47 -0.3 422,097 - ABZR86_RS01945 0.48 +1.0 422,097 - ABZR86_RS01945 0.48 +1.8 422,097 - ABZR86_RS01945 0.48 +1.0 422,097 - ABZR86_RS01945 0.48 +1.3 422,097 - ABZR86_RS01945 0.48 +1.7 422,333 + +0.0 422,333 + -4.2 422,333 + -0.3 422,333 + +0.2 422,333 + +0.1 422,486 + -1.1 422,599 - +0.1 422,609 + -0.4 422,609 + -1.0 422,610 - -0.1 422,622 + -0.6 422,623 - +0.1 422,665 + -0.2 422,665 + -0.7 422,665 + +0.2 422,697 - +1.3 422,697 - +0.3 422,718 + -0.0 422,719 - -0.7 422,719 - +0.4 422,831 + ABZR86_RS01955 0.18 -0.4 422,831 + ABZR86_RS01955 0.18 -0.2 422,832 - ABZR86_RS01955 0.18 -0.3 422,832 - ABZR86_RS01955 0.18 -1.0
Or see this region's nucleotide sequence