Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1714

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1713 and DvMF_1714 are separated by 254 nucleotidesDvMF_1714 and DvMF_1715 are separated by 17 nucleotides DvMF_1713: DvMF_1713 - DNA polymerase I (RefSeq), at 2,092,102 to 2,094,720 _1713 DvMF_1714: DvMF_1714 - protein of unknown function Met10 (RefSeq), at 2,094,975 to 2,096,189 _1714 DvMF_1715: DvMF_1715 - aminotransferase class V (RefSeq), at 2,096,207 to 2,097,376 _1715 Position (kb) 2094 2095 2096 2097Strain fitness (log2 ratio) -2 -1 0 1at 2094.518 kb on + strandat 2094.799 kb on + strandat 2094.799 kb on + strandat 2095.088 kb on + strandat 2095.149 kb on - strand, within DvMF_1714at 2095.267 kb on - strand, within DvMF_1714at 2095.315 kb on - strand, within DvMF_1714at 2095.317 kb on + strand, within DvMF_1714at 2095.893 kb on - strand, within DvMF_1714at 2096.161 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,094,518 + -2.6
2,094,799 + -0.5
2,094,799 + -0.2
2,095,088 + -0.7
2,095,149 - DvMF_1714 0.14 -1.2
2,095,267 - DvMF_1714 0.24 -0.5
2,095,315 - DvMF_1714 0.28 +0.5
2,095,317 + DvMF_1714 0.28 -0.2
2,095,893 - DvMF_1714 0.76 +0.5
2,096,161 - +0.1

Or see this region's nucleotide sequence