Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3911 and Shewana3_3912 overlap by 1 nucleotides Shewana3_3912 and Shewana3_3913 are separated by 186 nucleotides Shewana3_3913 and Shewana3_3914 are separated by 10 nucleotides Shewana3_3914 and Shewana3_3915 are separated by 167 nucleotides
Shewana3_3911: Shewana3_3911 - hypothetical protein (RefSeq), at 4,699,920 to 4,700,384
_3911
Shewana3_3912: Shewana3_3912 - hypothetical protein (RefSeq), at 4,700,384 to 4,701,052
_3912
Shewana3_3913: Shewana3_3913 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 4,701,239 to 4,702,900
_3913
Shewana3_3914: Shewana3_3914 - cytoplasmic chaperone TorD family protein (RefSeq), at 4,702,911 to 4,703,588
_3914
Shewana3_3915: Shewana3_3915 - hypothetical protein (RefSeq), at 4,703,756 to 4,703,953
_3915
Position (kb) 4701
4702
4703 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4700.277 kb on - strand, within Shewana3_3911 at 4700.444 kb on - strand at 4700.665 kb on + strand, within Shewana3_3912 at 4700.682 kb on - strand, within Shewana3_3912 at 4700.761 kb on - strand, within Shewana3_3912 at 4700.785 kb on + strand, within Shewana3_3912 at 4700.870 kb on + strand, within Shewana3_3912 at 4701.010 kb on - strand at 4701.209 kb on + strand at 4701.353 kb on + strand at 4701.475 kb on + strand, within Shewana3_3913 at 4701.483 kb on - strand, within Shewana3_3913 at 4701.639 kb on + strand, within Shewana3_3913 at 4701.648 kb on - strand, within Shewana3_3913 at 4701.802 kb on + strand, within Shewana3_3913 at 4701.896 kb on - strand, within Shewana3_3913 at 4701.986 kb on - strand, within Shewana3_3913 at 4702.069 kb on + strand, within Shewana3_3913 at 4702.118 kb on + strand, within Shewana3_3913 at 4702.159 kb on + strand, within Shewana3_3913 at 4702.292 kb on - strand, within Shewana3_3913 at 4702.371 kb on + strand, within Shewana3_3913 at 4702.391 kb on + strand, within Shewana3_3913 at 4702.418 kb on - strand, within Shewana3_3913 at 4702.513 kb on + strand, within Shewana3_3913 at 4702.522 kb on - strand, within Shewana3_3913 at 4702.755 kb on + strand at 4702.787 kb on + strand at 4703.110 kb on - strand, within Shewana3_3914 at 4703.131 kb on + strand, within Shewana3_3914 at 4703.149 kb on - strand, within Shewana3_3914 at 4703.185 kb on + strand, within Shewana3_3914 at 4703.213 kb on + strand, within Shewana3_3914 at 4703.303 kb on + strand, within Shewana3_3914 at 4703.310 kb on + strand, within Shewana3_3914 at 4703.311 kb on - strand, within Shewana3_3914 at 4703.337 kb on + strand, within Shewana3_3914 at 4703.411 kb on - strand, within Shewana3_3914 at 4703.614 kb on + strand at 4703.794 kb on + strand, within Shewana3_3915 at 4703.815 kb on - strand, within Shewana3_3915 at 4703.871 kb on + strand, within Shewana3_3915
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,700,277 - Shewana3_3911 0.77 +0.7 4,700,444 - -2.2 4,700,665 + Shewana3_3912 0.42 +0.2 4,700,682 - Shewana3_3912 0.45 +0.2 4,700,761 - Shewana3_3912 0.56 -2.9 4,700,785 + Shewana3_3912 0.60 -0.3 4,700,870 + Shewana3_3912 0.73 -1.9 4,701,010 - +0.4 4,701,209 + -0.2 4,701,353 + +0.3 4,701,475 + Shewana3_3913 0.14 +0.3 4,701,483 - Shewana3_3913 0.15 -1.0 4,701,639 + Shewana3_3913 0.24 +0.5 4,701,648 - Shewana3_3913 0.25 +1.0 4,701,802 + Shewana3_3913 0.34 +0.1 4,701,896 - Shewana3_3913 0.40 +1.4 4,701,986 - Shewana3_3913 0.45 +0.3 4,702,069 + Shewana3_3913 0.50 -2.0 4,702,118 + Shewana3_3913 0.53 -1.3 4,702,159 + Shewana3_3913 0.55 -0.6 4,702,292 - Shewana3_3913 0.63 +0.3 4,702,371 + Shewana3_3913 0.68 +0.9 4,702,391 + Shewana3_3913 0.69 +0.6 4,702,418 - Shewana3_3913 0.71 -0.0 4,702,513 + Shewana3_3913 0.77 +0.9 4,702,522 - Shewana3_3913 0.77 -0.1 4,702,755 + +0.3 4,702,787 + -0.1 4,703,110 - Shewana3_3914 0.29 +0.0 4,703,131 + Shewana3_3914 0.32 +0.8 4,703,149 - Shewana3_3914 0.35 +0.5 4,703,185 + Shewana3_3914 0.40 -1.3 4,703,213 + Shewana3_3914 0.45 -1.3 4,703,303 + Shewana3_3914 0.58 -2.7 4,703,310 + Shewana3_3914 0.59 -1.4 4,703,311 - Shewana3_3914 0.59 +0.7 4,703,337 + Shewana3_3914 0.63 +0.4 4,703,411 - Shewana3_3914 0.74 +0.0 4,703,614 + +0.2 4,703,794 + Shewana3_3915 0.19 +0.5 4,703,815 - Shewana3_3915 0.30 +0.2 4,703,871 + Shewana3_3915 0.58 +1.8
Or see this region's nucleotide sequence