Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3716

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3715 and Shewana3_3716 are separated by 127 nucleotidesShewana3_3716 and Shewana3_3717 are separated by 143 nucleotides Shewana3_3715: Shewana3_3715 - TonB-dependent receptor (RefSeq), at 4,457,096 to 4,459,534 _3715 Shewana3_3716: Shewana3_3716 - hypothetical protein (RefSeq), at 4,459,662 to 4,460,123 _3716 Shewana3_3717: Shewana3_3717 - putative manganese-dependent inorganic pyrophosphatase (RefSeq), at 4,460,267 to 4,461,187 _3717 Position (kb) 4459 4460 4461Strain fitness (log2 ratio) -2 -1 0 1at 4458.776 kb on - strand, within Shewana3_3715at 4458.810 kb on + strand, within Shewana3_3715at 4458.864 kb on + strand, within Shewana3_3715at 4458.877 kb on - strand, within Shewana3_3715at 4458.884 kb on - strand, within Shewana3_3715at 4458.975 kb on - strand, within Shewana3_3715at 4458.976 kb on - strand, within Shewana3_3715at 4459.101 kb on - strand, within Shewana3_3715at 4459.158 kb on + strand, within Shewana3_3715at 4459.224 kb on + strand, within Shewana3_3715at 4459.224 kb on + strand, within Shewana3_3715at 4459.226 kb on - strand, within Shewana3_3715at 4459.318 kb on + strandat 4459.373 kb on + strandat 4459.373 kb on + strandat 4459.381 kb on - strandat 4459.381 kb on - strandat 4459.452 kb on - strandat 4459.725 kb on + strand, within Shewana3_3716at 4459.969 kb on - strand, within Shewana3_3716

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,458,776 - Shewana3_3715 0.69 -2.0
4,458,810 + Shewana3_3715 0.70 -0.2
4,458,864 + Shewana3_3715 0.72 -0.3
4,458,877 - Shewana3_3715 0.73 -0.1
4,458,884 - Shewana3_3715 0.73 -0.0
4,458,975 - Shewana3_3715 0.77 +0.0
4,458,976 - Shewana3_3715 0.77 +0.7
4,459,101 - Shewana3_3715 0.82 -1.5
4,459,158 + Shewana3_3715 0.85 +0.1
4,459,224 + Shewana3_3715 0.87 +0.5
4,459,224 + Shewana3_3715 0.87 +0.1
4,459,226 - Shewana3_3715 0.87 +0.8
4,459,318 + +0.5
4,459,373 + +0.6
4,459,373 + +0.5
4,459,381 - -0.1
4,459,381 - -2.0
4,459,452 - -0.6
4,459,725 + Shewana3_3716 0.14 +0.1
4,459,969 - Shewana3_3716 0.66 +0.8

Or see this region's nucleotide sequence