Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2423 and Shewana3_2424 are separated by 66 nucleotides Shewana3_2424 and Shewana3_2425 are separated by 580 nucleotides
Shewana3_2423: Shewana3_2423 - peptidase M23B (RefSeq), at 2,905,409 to 2,906,329
_2423
Shewana3_2424: Shewana3_2424 - isocitrate dehydrogenase (NADP(+)) (RefSeq), at 2,906,396 to 2,907,271
_2424
Shewana3_2425: Shewana3_2425 - di-haem cytochrome c peroxidase (RefSeq), at 2,907,852 to 2,908,853
_2425
Position (kb)
2906
2907
2908 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2905.641 kb on + strand, within Shewana3_2423 at 2905.660 kb on + strand, within Shewana3_2423 at 2905.915 kb on - strand, within Shewana3_2423 at 2906.004 kb on - strand, within Shewana3_2423 at 2906.230 kb on - strand, within Shewana3_2423 at 2906.657 kb on + strand, within Shewana3_2424 at 2906.770 kb on - strand, within Shewana3_2424 at 2906.863 kb on + strand, within Shewana3_2424 at 2906.892 kb on + strand, within Shewana3_2424 at 2906.966 kb on + strand, within Shewana3_2424 at 2906.995 kb on - strand, within Shewana3_2424 at 2907.016 kb on - strand, within Shewana3_2424 at 2907.016 kb on - strand, within Shewana3_2424 at 2907.109 kb on + strand, within Shewana3_2424 at 2907.165 kb on - strand, within Shewana3_2424 at 2907.342 kb on + strand at 2907.406 kb on - strand at 2907.595 kb on - strand at 2907.636 kb on + strand at 2907.888 kb on - strand at 2908.123 kb on - strand, within Shewana3_2425 at 2908.180 kb on + strand, within Shewana3_2425
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,905,641 + Shewana3_2423 0.25 +0.4 2,905,660 + Shewana3_2423 0.27 -1.3 2,905,915 - Shewana3_2423 0.55 +0.4 2,906,004 - Shewana3_2423 0.65 +0.7 2,906,230 - Shewana3_2423 0.89 +0.3 2,906,657 + Shewana3_2424 0.30 -0.7 2,906,770 - Shewana3_2424 0.43 -1.3 2,906,863 + Shewana3_2424 0.53 -0.5 2,906,892 + Shewana3_2424 0.57 -0.3 2,906,966 + Shewana3_2424 0.65 -0.1 2,906,995 - Shewana3_2424 0.68 -2.8 2,907,016 - Shewana3_2424 0.71 -3.2 2,907,016 - Shewana3_2424 0.71 -0.3 2,907,109 + Shewana3_2424 0.81 +0.5 2,907,165 - Shewana3_2424 0.88 +0.1 2,907,342 + -1.8 2,907,406 - +0.6 2,907,595 - +0.0 2,907,636 + -2.7 2,907,888 - +0.2 2,908,123 - Shewana3_2425 0.27 -0.2 2,908,180 + Shewana3_2425 0.33 -1.1
Or see this region's nucleotide sequence