Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2299 and Shewana3_2300 are separated by 55 nucleotides Shewana3_2300 and Shewana3_2301 are separated by 137 nucleotides
Shewana3_2299: Shewana3_2299 - hypothetical protein (RefSeq), at 2,762,417 to 2,763,352
_2299
Shewana3_2300: Shewana3_2300 - GCN5-related N-acetyltransferase (RefSeq), at 2,763,408 to 2,763,866
_2300
Shewana3_2301: Shewana3_2301 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,764,004 to 2,766,067
_2301
Position (kb)
2763
2764 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2762.440 kb on + strand at 2762.553 kb on - strand, within Shewana3_2299 at 2762.667 kb on - strand, within Shewana3_2299 at 2762.782 kb on - strand, within Shewana3_2299 at 2762.856 kb on + strand, within Shewana3_2299 at 2762.885 kb on + strand, within Shewana3_2299 at 2763.599 kb on - strand, within Shewana3_2300 at 2763.637 kb on + strand, within Shewana3_2300 at 2763.645 kb on - strand, within Shewana3_2300 at 2763.705 kb on + strand, within Shewana3_2300 at 2763.713 kb on - strand, within Shewana3_2300 at 2763.770 kb on + strand, within Shewana3_2300 at 2763.773 kb on - strand, within Shewana3_2300 at 2763.780 kb on + strand, within Shewana3_2300 at 2763.783 kb on - strand, within Shewana3_2300 at 2763.807 kb on - strand, within Shewana3_2300 at 2764.435 kb on - strand, within Shewana3_2301 at 2764.616 kb on - strand, within Shewana3_2301 at 2764.643 kb on - strand, within Shewana3_2301 at 2764.667 kb on + strand, within Shewana3_2301 at 2764.840 kb on - strand, within Shewana3_2301
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,762,440 + -2.0 2,762,553 - Shewana3_2299 0.15 +0.3 2,762,667 - Shewana3_2299 0.27 +0.9 2,762,782 - Shewana3_2299 0.39 -0.0 2,762,856 + Shewana3_2299 0.47 -1.1 2,762,885 + Shewana3_2299 0.50 -3.3 2,763,599 - Shewana3_2300 0.42 +1.4 2,763,637 + Shewana3_2300 0.50 +0.3 2,763,645 - Shewana3_2300 0.52 +0.5 2,763,705 + Shewana3_2300 0.65 +0.1 2,763,713 - Shewana3_2300 0.66 -1.5 2,763,770 + Shewana3_2300 0.79 +0.2 2,763,773 - Shewana3_2300 0.80 +0.4 2,763,780 + Shewana3_2300 0.81 +0.3 2,763,783 - Shewana3_2300 0.82 +0.6 2,763,807 - Shewana3_2300 0.87 -0.4 2,764,435 - Shewana3_2301 0.21 +0.2 2,764,616 - Shewana3_2301 0.30 +0.5 2,764,643 - Shewana3_2301 0.31 -1.0 2,764,667 + Shewana3_2301 0.32 -0.1 2,764,840 - Shewana3_2301 0.41 +0.8
Or see this region's nucleotide sequence