Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2213 and Shewana3_2214 are separated by 3 nucleotides Shewana3_2214 and Shewana3_2215 are separated by 0 nucleotides Shewana3_2215 and Shewana3_2216 are separated by 0 nucleotides
Shewana3_2213: Shewana3_2213 - response regulator receiver modulated CheB methylesterase (RefSeq), at 2,659,747 to 2,660,802
_2213
Shewana3_2214: Shewana3_2214 - chemoreceptor glutamine deamidase CheD (RefSeq), at 2,660,806 to 2,661,426
_2214
Shewana3_2215: Shewana3_2215 - MCP methyltransferase, CheR-type (RefSeq), at 2,661,427 to 2,662,257
_2215
Shewana3_2216: Shewana3_2216 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,662,258 to 2,664,231
_2216
Position (kb)
2661
2662
2663 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2661.028 kb on - strand, within Shewana3_2214 at 2661.286 kb on + strand, within Shewana3_2214 at 2661.286 kb on + strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.709 kb on + strand, within Shewana3_2215 at 2661.722 kb on - strand, within Shewana3_2215 at 2661.816 kb on - strand, within Shewana3_2215 at 2661.910 kb on - strand, within Shewana3_2215 at 2661.914 kb on + strand, within Shewana3_2215 at 2662.143 kb on + strand, within Shewana3_2215 at 2662.199 kb on + strand at 2662.199 kb on + strand at 2662.413 kb on - strand at 2662.741 kb on - strand, within Shewana3_2216 at 2662.758 kb on + strand, within Shewana3_2216 at 2663.053 kb on - strand, within Shewana3_2216 at 2663.067 kb on + strand, within Shewana3_2216 at 2663.084 kb on - strand, within Shewana3_2216 at 2663.222 kb on - strand, within Shewana3_2216 at 2663.237 kb on + strand, within Shewana3_2216
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,661,028 - Shewana3_2214 0.36 -0.7 2,661,286 + Shewana3_2214 0.77 -2.1 2,661,286 + Shewana3_2214 0.77 -2.1 2,661,294 - Shewana3_2214 0.79 +0.9 2,661,294 - Shewana3_2214 0.79 +0.5 2,661,294 - Shewana3_2214 0.79 +0.3 2,661,709 + Shewana3_2215 0.34 -2.8 2,661,722 - Shewana3_2215 0.35 -2.4 2,661,816 - Shewana3_2215 0.47 -2.4 2,661,910 - Shewana3_2215 0.58 -2.0 2,661,914 + Shewana3_2215 0.59 -0.1 2,662,143 + Shewana3_2215 0.86 -1.9 2,662,199 + -0.7 2,662,199 + +0.1 2,662,413 - +0.2 2,662,741 - Shewana3_2216 0.24 +0.2 2,662,758 + Shewana3_2216 0.25 -0.4 2,663,053 - Shewana3_2216 0.40 -2.0 2,663,067 + Shewana3_2216 0.41 +0.4 2,663,084 - Shewana3_2216 0.42 -0.5 2,663,222 - Shewana3_2216 0.49 +0.2 2,663,237 + Shewana3_2216 0.50 -0.1
Or see this region's nucleotide sequence