Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1925

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1924 and Shewana3_1925 are separated by 131 nucleotidesShewana3_1925 and Shewana3_1926 are separated by 741 nucleotides Shewana3_1924: Shewana3_1924 - glucan 1,4-alpha-glucosidase (RefSeq), at 2,287,223 to 2,289,736 _1924 Shewana3_1925: Shewana3_1925 - major facilitator transporter (RefSeq), at 2,289,868 to 2,291,463 _1925 Shewana3_1926: Shewana3_1926 - YCII-related (RefSeq), at 2,292,205 to 2,292,483 _1926 Position (kb) 2289 2290 2291 2292Strain fitness (log2 ratio) -3 -2 -1 0 1at 2289.297 kb on + strand, within Shewana3_1924at 2289.468 kb on + strand, within Shewana3_1924at 2289.874 kb on - strandat 2289.895 kb on - strandat 2289.962 kb on - strandat 2290.028 kb on - strand, within Shewana3_1925at 2290.132 kb on - strand, within Shewana3_1925at 2290.306 kb on + strand, within Shewana3_1925at 2290.346 kb on + strand, within Shewana3_1925at 2290.653 kb on - strand, within Shewana3_1925at 2290.888 kb on + strand, within Shewana3_1925at 2291.499 kb on - strandat 2291.713 kb on + strandat 2291.742 kb on + strandat 2291.752 kb on + strandat 2291.760 kb on - strandat 2291.873 kb on + strandat 2291.910 kb on + strandat 2291.911 kb on + strandat 2291.918 kb on - strandat 2291.918 kb on - strandat 2292.109 kb on + strandat 2292.127 kb on - strandat 2292.190 kb on + strandat 2292.253 kb on - strand, within Shewana3_1926

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,289,297 + Shewana3_1924 0.82 +1.3
2,289,468 + Shewana3_1924 0.89 -1.2
2,289,874 - -1.3
2,289,895 - -3.6
2,289,962 - -1.0
2,290,028 - Shewana3_1925 0.10 -0.8
2,290,132 - Shewana3_1925 0.17 -0.9
2,290,306 + Shewana3_1925 0.27 +1.4
2,290,346 + Shewana3_1925 0.30 -0.3
2,290,653 - Shewana3_1925 0.49 -0.5
2,290,888 + Shewana3_1925 0.64 -0.8
2,291,499 - +0.0
2,291,713 + -0.8
2,291,742 + -1.3
2,291,752 + +0.3
2,291,760 - +0.5
2,291,873 + -0.4
2,291,910 + -2.3
2,291,911 + -1.6
2,291,918 - +0.6
2,291,918 - +0.2
2,292,109 + +0.3
2,292,127 - -2.8
2,292,190 + -1.8
2,292,253 - Shewana3_1926 0.17 -0.4

Or see this region's nucleotide sequence