Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1658 and Shewana3_1659 overlap by 4 nucleotides Shewana3_1659 and Shewana3_1660 are separated by 74 nucleotides Shewana3_1660 and Shewana3_1661 overlap by 1 nucleotides
Shewana3_1658: Shewana3_1658 - RND family efflux transporter MFP subunit (RefSeq), at 1,948,635 to 1,949,717
_1658
Shewana3_1659: Shewana3_1659 - acriflavin resistance protein (RefSeq), at 1,949,714 to 1,952,809
_1659
Shewana3_1660: Shewana3_1660 - GCN5-related N-acetyltransferase (RefSeq), at 1,952,884 to 1,953,318
_1660
Shewana3_1661: Shewana3_1661 - negative transcriptional regulator (RefSeq), at 1,953,318 to 1,954,001
_1661
Position (kb) 1949
1950
1951
1952
1953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1948.743 kb on - strand at 1948.785 kb on + strand, within Shewana3_1658 at 1948.952 kb on + strand, within Shewana3_1658 at 1949.071 kb on + strand, within Shewana3_1658 at 1949.078 kb on - strand, within Shewana3_1658 at 1949.150 kb on - strand, within Shewana3_1658 at 1949.222 kb on - strand, within Shewana3_1658 at 1949.858 kb on + strand at 1950.133 kb on + strand, within Shewana3_1659 at 1950.146 kb on - strand, within Shewana3_1659 at 1950.162 kb on + strand, within Shewana3_1659 at 1950.162 kb on + strand, within Shewana3_1659 at 1950.162 kb on + strand, within Shewana3_1659 at 1950.170 kb on - strand, within Shewana3_1659 at 1950.170 kb on - strand, within Shewana3_1659 at 1950.170 kb on - strand, within Shewana3_1659 at 1950.430 kb on - strand, within Shewana3_1659 at 1950.510 kb on + strand, within Shewana3_1659 at 1950.566 kb on - strand, within Shewana3_1659 at 1950.566 kb on - strand, within Shewana3_1659 at 1950.599 kb on - strand, within Shewana3_1659 at 1951.137 kb on - strand, within Shewana3_1659 at 1951.180 kb on + strand, within Shewana3_1659 at 1951.188 kb on - strand, within Shewana3_1659 at 1951.327 kb on - strand, within Shewana3_1659 at 1951.499 kb on - strand, within Shewana3_1659 at 1951.797 kb on + strand, within Shewana3_1659 at 1951.809 kb on + strand, within Shewana3_1659 at 1951.817 kb on - strand, within Shewana3_1659 at 1951.874 kb on - strand, within Shewana3_1659 at 1951.874 kb on - strand, within Shewana3_1659 at 1951.964 kb on - strand, within Shewana3_1659 at 1952.348 kb on - strand, within Shewana3_1659 at 1952.351 kb on - strand, within Shewana3_1659 at 1952.675 kb on - strand at 1952.711 kb on + strand at 1952.744 kb on + strand at 1952.803 kb on + strand at 1952.803 kb on + strand at 1952.885 kb on + strand at 1952.950 kb on + strand, within Shewana3_1660 at 1953.078 kb on + strand, within Shewana3_1660 at 1953.239 kb on - strand, within Shewana3_1660 at 1953.280 kb on - strand at 1953.401 kb on + strand, within Shewana3_1661 at 1953.431 kb on - strand, within Shewana3_1661 at 1953.665 kb on - strand, within Shewana3_1661
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 1,948,743 - -0.6 1,948,785 + Shewana3_1658 0.14 +0.8 1,948,952 + Shewana3_1658 0.29 -0.8 1,949,071 + Shewana3_1658 0.40 -1.8 1,949,078 - Shewana3_1658 0.41 +0.3 1,949,150 - Shewana3_1658 0.48 -1.0 1,949,222 - Shewana3_1658 0.54 +0.2 1,949,858 + +0.5 1,950,133 + Shewana3_1659 0.14 +0.1 1,950,146 - Shewana3_1659 0.14 +0.2 1,950,162 + Shewana3_1659 0.14 -0.1 1,950,162 + Shewana3_1659 0.14 +1.0 1,950,162 + Shewana3_1659 0.14 +0.3 1,950,170 - Shewana3_1659 0.15 -2.0 1,950,170 - Shewana3_1659 0.15 -0.2 1,950,170 - Shewana3_1659 0.15 -1.6 1,950,430 - Shewana3_1659 0.23 +0.8 1,950,510 + Shewana3_1659 0.26 +0.7 1,950,566 - Shewana3_1659 0.28 -2.0 1,950,566 - Shewana3_1659 0.28 -3.4 1,950,599 - Shewana3_1659 0.29 -1.0 1,951,137 - Shewana3_1659 0.46 -1.4 1,951,180 + Shewana3_1659 0.47 -2.0 1,951,188 - Shewana3_1659 0.48 +0.8 1,951,327 - Shewana3_1659 0.52 -0.6 1,951,499 - Shewana3_1659 0.58 -0.4 1,951,797 + Shewana3_1659 0.67 -1.1 1,951,809 + Shewana3_1659 0.68 -2.4 1,951,817 - Shewana3_1659 0.68 +1.8 1,951,874 - Shewana3_1659 0.70 -1.5 1,951,874 - Shewana3_1659 0.70 +0.2 1,951,964 - Shewana3_1659 0.73 -1.2 1,952,348 - Shewana3_1659 0.85 -2.3 1,952,351 - Shewana3_1659 0.85 +0.4 1,952,675 - -1.5 1,952,711 + +0.6 1,952,744 + -1.1 1,952,803 + +0.8 1,952,803 + +0.5 1,952,885 + -1.0 1,952,950 + Shewana3_1660 0.15 +0.5 1,953,078 + Shewana3_1660 0.45 +0.2 1,953,239 - Shewana3_1660 0.82 +0.6 1,953,280 - -0.4 1,953,401 + Shewana3_1661 0.12 +0.1 1,953,431 - Shewana3_1661 0.17 +0.7 1,953,665 - Shewana3_1661 0.51 +0.3
Or see this region's nucleotide sequence