Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0842 and Shewana3_0843 are separated by 161 nucleotides Shewana3_0843 and Shewana3_0844 are separated by 96 nucleotides
Shewana3_0842: Shewana3_0842 - peptidase M16 domain-containing protein (RefSeq), at 975,240 to 976,655
_0842
Shewana3_0843: Shewana3_0843 - hypothetical protein (RefSeq), at 976,817 to 977,644
_0843
Shewana3_0844: Shewana3_0844 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 977,741 to 978,655
_0844
Position (kb) 976
977
978 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 975.859 kb on - strand, within Shewana3_0842 at 975.898 kb on + strand, within Shewana3_0842 at 975.906 kb on - strand, within Shewana3_0842 at 975.908 kb on + strand, within Shewana3_0842 at 975.908 kb on + strand, within Shewana3_0842 at 975.916 kb on - strand, within Shewana3_0842 at 975.983 kb on - strand, within Shewana3_0842 at 976.057 kb on - strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.222 kb on - strand, within Shewana3_0842 at 976.250 kb on + strand, within Shewana3_0842 at 976.257 kb on + strand, within Shewana3_0842 at 976.258 kb on - strand, within Shewana3_0842 at 976.265 kb on - strand, within Shewana3_0842 at 976.265 kb on - strand, within Shewana3_0842 at 976.269 kb on + strand, within Shewana3_0842 at 976.351 kb on + strand, within Shewana3_0842 at 976.458 kb on - strand, within Shewana3_0842 at 976.470 kb on + strand, within Shewana3_0842 at 976.487 kb on - strand, within Shewana3_0842 at 976.603 kb on + strand at 976.611 kb on - strand at 976.712 kb on + strand at 976.790 kb on + strand at 976.816 kb on - strand at 976.827 kb on - strand at 976.971 kb on + strand, within Shewana3_0843 at 977.001 kb on + strand, within Shewana3_0843 at 977.059 kb on + strand, within Shewana3_0843 at 977.059 kb on + strand, within Shewana3_0843 at 977.225 kb on + strand, within Shewana3_0843 at 977.330 kb on + strand, within Shewana3_0843 at 977.404 kb on - strand, within Shewana3_0843 at 977.518 kb on + strand, within Shewana3_0843 at 977.553 kb on + strand, within Shewana3_0843 at 977.731 kb on - strand at 977.774 kb on - strand at 977.808 kb on + strand at 977.857 kb on - strand, within Shewana3_0844 at 977.889 kb on - strand, within Shewana3_0844 at 977.906 kb on + strand, within Shewana3_0844 at 978.013 kb on - strand, within Shewana3_0844 at 978.038 kb on + strand, within Shewana3_0844 at 978.079 kb on - strand, within Shewana3_0844 at 978.090 kb on + strand, within Shewana3_0844 at 978.142 kb on - strand, within Shewana3_0844 at 978.241 kb on - strand, within Shewana3_0844 at 978.459 kb on - strand, within Shewana3_0844 at 978.517 kb on - strand, within Shewana3_0844 at 978.529 kb on - strand, within Shewana3_0844 at 978.529 kb on - strand, within Shewana3_0844 at 978.531 kb on + strand, within Shewana3_0844 at 978.539 kb on - strand, within Shewana3_0844 at 978.539 kb on - strand, within Shewana3_0844 at 978.604 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 975,859 - Shewana3_0842 0.44 +0.2 975,898 + Shewana3_0842 0.46 +0.4 975,906 - Shewana3_0842 0.47 +0.7 975,908 + Shewana3_0842 0.47 +0.9 975,908 + Shewana3_0842 0.47 -1.8 975,916 - Shewana3_0842 0.48 -1.9 975,983 - Shewana3_0842 0.52 +0.1 976,057 - Shewana3_0842 0.58 -2.0 976,096 + Shewana3_0842 0.60 +0.7 976,096 + Shewana3_0842 0.60 -1.6 976,096 + Shewana3_0842 0.60 +1.2 976,096 + Shewana3_0842 0.60 +0.2 976,096 + Shewana3_0842 0.60 -0.2 976,096 + Shewana3_0842 0.60 +0.3 976,096 + Shewana3_0842 0.60 -1.9 976,104 - Shewana3_0842 0.61 -3.3 976,104 - Shewana3_0842 0.61 +0.4 976,104 - Shewana3_0842 0.61 -1.3 976,104 - Shewana3_0842 0.61 +0.1 976,222 - Shewana3_0842 0.69 +0.2 976,250 + Shewana3_0842 0.71 -1.2 976,257 + Shewana3_0842 0.72 -2.7 976,258 - Shewana3_0842 0.72 +0.7 976,265 - Shewana3_0842 0.72 -3.4 976,265 - Shewana3_0842 0.72 +0.2 976,269 + Shewana3_0842 0.73 -2.2 976,351 + Shewana3_0842 0.78 +0.6 976,458 - Shewana3_0842 0.86 +1.1 976,470 + Shewana3_0842 0.87 +0.2 976,487 - Shewana3_0842 0.88 +0.3 976,603 + +1.0 976,611 - +0.1 976,712 + +0.4 976,790 + -0.4 976,816 - -5.0 976,827 - -5.6 976,971 + Shewana3_0843 0.19 -1.3 977,001 + Shewana3_0843 0.22 -4.1 977,059 + Shewana3_0843 0.29 -4.9 977,059 + Shewana3_0843 0.29 -6.2 977,225 + Shewana3_0843 0.49 -5.9 977,330 + Shewana3_0843 0.62 -5.1 977,404 - Shewana3_0843 0.71 -4.9 977,518 + Shewana3_0843 0.85 -4.3 977,553 + Shewana3_0843 0.89 -4.8 977,731 - +0.6 977,774 - -0.9 977,808 + +0.7 977,857 - Shewana3_0844 0.13 -0.1 977,889 - Shewana3_0844 0.16 +0.3 977,906 + Shewana3_0844 0.18 +0.5 978,013 - Shewana3_0844 0.30 -0.1 978,038 + Shewana3_0844 0.32 -3.3 978,079 - Shewana3_0844 0.37 -0.1 978,090 + Shewana3_0844 0.38 +0.8 978,142 - Shewana3_0844 0.44 +0.2 978,241 - Shewana3_0844 0.55 -0.5 978,459 - Shewana3_0844 0.78 -0.7 978,517 - Shewana3_0844 0.85 -0.6 978,529 - Shewana3_0844 0.86 -2.3 978,529 - Shewana3_0844 0.86 -0.3 978,531 + Shewana3_0844 0.86 -0.4 978,539 - Shewana3_0844 0.87 +0.6 978,539 - Shewana3_0844 0.87 -1.8 978,604 + -2.3
Or see this region's nucleotide sequence