Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt modC and modB overlap by 7 nucleotides modB and Shewana3_0743 overlap by 1 nucleotides Shewana3_0743 and Shewana3_0744 are separated by 202 nucleotides
Shewana3_0741: modC - molybdate transporter ATP-binding protein (RefSeq), at 860,679 to 861,764
modC
Shewana3_0742: modB - molybdate ABC transporter permease protein (RefSeq), at 861,758 to 862,495
modB
Shewana3_0743: Shewana3_0743 - molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq), at 862,495 to 863,280
_0743
Shewana3_0744: Shewana3_0744 - ModE family transcriptional regulator (RefSeq), at 863,483 to 864,262
_0744
Position (kb) 861
862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 860.779 kb on + strand at 861.256 kb on + strand, within modC at 861.305 kb on - strand, within modC at 861.305 kb on - strand, within modC at 861.331 kb on + strand, within modC at 861.375 kb on + strand, within modC at 861.399 kb on + strand, within modC at 861.720 kb on + strand at 861.728 kb on - strand at 861.728 kb on - strand at 861.821 kb on + strand at 861.994 kb on - strand, within modB at 862.165 kb on + strand, within modB at 862.173 kb on - strand, within modB at 862.248 kb on - strand, within modB at 862.256 kb on - strand, within modB at 862.314 kb on + strand, within modB at 862.318 kb on - strand, within modB at 862.500 kb on - strand at 862.554 kb on - strand at 862.734 kb on - strand, within Shewana3_0743 at 862.894 kb on + strand, within Shewana3_0743 at 862.919 kb on - strand, within Shewana3_0743 at 862.938 kb on + strand, within Shewana3_0743 at 863.007 kb on - strand, within Shewana3_0743 at 863.029 kb on + strand, within Shewana3_0743 at 863.037 kb on - strand, within Shewana3_0743 at 863.040 kb on - strand, within Shewana3_0743 at 863.230 kb on + strand at 863.231 kb on - strand at 863.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 860,779 + +0.6 861,256 + modC Shewana3_0741 0.53 +0.3 861,305 - modC Shewana3_0741 0.58 +0.8 861,305 - modC Shewana3_0741 0.58 -0.6 861,331 + modC Shewana3_0741 0.60 -2.6 861,375 + modC Shewana3_0741 0.64 -2.4 861,399 + modC Shewana3_0741 0.66 +0.4 861,720 + -2.4 861,728 - +0.5 861,728 - -0.2 861,821 + -1.1 861,994 - modB Shewana3_0742 0.32 +0.4 862,165 + modB Shewana3_0742 0.55 -0.1 862,173 - modB Shewana3_0742 0.56 -2.4 862,248 - modB Shewana3_0742 0.66 +0.2 862,256 - modB Shewana3_0742 0.67 -1.5 862,314 + modB Shewana3_0742 0.75 -3.0 862,318 - modB Shewana3_0742 0.76 -1.4 862,500 - -0.8 862,554 - +0.1 862,734 - Shewana3_0743 0.30 +0.7 862,894 + Shewana3_0743 0.51 -1.5 862,919 - Shewana3_0743 0.54 +0.6 862,938 + Shewana3_0743 0.56 +0.7 863,007 - Shewana3_0743 0.65 -1.3 863,029 + Shewana3_0743 0.68 +0.3 863,037 - Shewana3_0743 0.69 +0.4 863,040 - Shewana3_0743 0.69 -3.1 863,230 + -1.6 863,231 - -1.0 863,467 - -1.2
Or see this region's nucleotide sequence