Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0719

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0718 and Shewana3_0719 are separated by 211 nucleotidesShewana3_0719 and Shewana3_0720 are separated by 145 nucleotidesShewana3_0720 and Shewana3_0721 are separated by 138 nucleotides Shewana3_0718: Shewana3_0718 - tRNA-dihydrouridine synthase A (RefSeq), at 836,488 to 837,492 _0718 Shewana3_0719: Shewana3_0719 - hypothetical protein (RefSeq), at 837,704 to 837,997 _0719 Shewana3_0720: Shewana3_0720 - phage shock protein C, PspC (RefSeq), at 838,143 to 838,343 _0720 Shewana3_0721: Shewana3_0721 - enoyl-CoA hydratase (RefSeq), at 838,482 to 839,219 _0721 Position (kb) 837 838Strain fitness (log2 ratio) -2 -1 0 1at 836.770 kb on - strand, within Shewana3_0718at 836.872 kb on - strand, within Shewana3_0718at 836.889 kb on + strand, within Shewana3_0718at 836.921 kb on + strand, within Shewana3_0718at 836.929 kb on - strand, within Shewana3_0718at 837.029 kb on + strand, within Shewana3_0718at 837.077 kb on + strand, within Shewana3_0718at 837.085 kb on - strand, within Shewana3_0718at 837.148 kb on - strand, within Shewana3_0718at 837.240 kb on + strand, within Shewana3_0718at 837.307 kb on - strand, within Shewana3_0718at 837.781 kb on + strand, within Shewana3_0719at 837.781 kb on + strand, within Shewana3_0719at 837.794 kb on + strand, within Shewana3_0719at 837.864 kb on - strand, within Shewana3_0719at 837.877 kb on + strand, within Shewana3_0719at 837.877 kb on + strand, within Shewana3_0719at 837.974 kb on + strandat 837.974 kb on + strandat 837.974 kb on + strandat 837.974 kb on + strandat 837.974 kb on + strandat 837.982 kb on - strandat 838.034 kb on - strandat 838.171 kb on + strand, within Shewana3_0720at 838.179 kb on - strand, within Shewana3_0720at 838.242 kb on + strand, within Shewana3_0720at 838.250 kb on - strand, within Shewana3_0720at 838.310 kb on - strand, within Shewana3_0720at 838.435 kb on - strandat 838.467 kb on - strandat 838.477 kb on - strandat 838.563 kb on + strand, within Shewana3_0721at 838.669 kb on - strand, within Shewana3_0721at 838.794 kb on + strand, within Shewana3_0721at 838.796 kb on - strand, within Shewana3_0721at 838.802 kb on - strand, within Shewana3_0721at 838.880 kb on - strand, within Shewana3_0721at 838.890 kb on - strand, within Shewana3_0721at 838.896 kb on - strand, within Shewana3_0721at 838.900 kb on - strand, within Shewana3_0721at 838.905 kb on - strand, within Shewana3_0721

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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836,770 - Shewana3_0718 0.28 +0.8
836,872 - Shewana3_0718 0.38 +1.3
836,889 + Shewana3_0718 0.40 -1.9
836,921 + Shewana3_0718 0.43 -1.8
836,929 - Shewana3_0718 0.44 +0.3
837,029 + Shewana3_0718 0.54 +0.4
837,077 + Shewana3_0718 0.59 -2.2
837,085 - Shewana3_0718 0.59 -1.7
837,148 - Shewana3_0718 0.66 +1.4
837,240 + Shewana3_0718 0.75 -1.9
837,307 - Shewana3_0718 0.81 +0.2
837,781 + Shewana3_0719 0.26 +0.3
837,781 + Shewana3_0719 0.26 -2.0
837,794 + Shewana3_0719 0.31 -0.3
837,864 - Shewana3_0719 0.54 -1.9
837,877 + Shewana3_0719 0.59 +0.9
837,877 + Shewana3_0719 0.59 +0.3
837,974 + -1.9
837,974 + +0.5
837,974 + -1.0
837,974 + +0.2
837,974 + -0.3
837,982 - +0.2
838,034 - -0.2
838,171 + Shewana3_0720 0.14 +0.6
838,179 - Shewana3_0720 0.18 -0.2
838,242 + Shewana3_0720 0.49 -1.2
838,250 - Shewana3_0720 0.53 +0.5
838,310 - Shewana3_0720 0.83 +0.1
838,435 - +0.7
838,467 - +0.3
838,477 - +0.5
838,563 + Shewana3_0721 0.11 -0.7
838,669 - Shewana3_0721 0.25 +0.3
838,794 + Shewana3_0721 0.42 +0.5
838,796 - Shewana3_0721 0.43 +0.6
838,802 - Shewana3_0721 0.43 +1.4
838,880 - Shewana3_0721 0.54 -0.0
838,890 - Shewana3_0721 0.55 +0.7
838,896 - Shewana3_0721 0.56 +1.4
838,900 - Shewana3_0721 0.57 +0.6
838,905 - Shewana3_0721 0.57 -1.2

Or see this region's nucleotide sequence