Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0628 and Shewana3_0629 are separated by 118 nucleotides Shewana3_0629 and Shewana3_0630 are separated by 68 nucleotides Shewana3_0630 and Shewana3_0631 are separated by 259 nucleotides
Shewana3_0628: Shewana3_0628 - hypothetical protein (RefSeq), at 737,995 to 738,405
_0628
Shewana3_0629: Shewana3_0629 - hypothetical protein (RefSeq), at 738,524 to 738,754
_0629
Shewana3_0630: Shewana3_0630 - no description, at 738,823 to 741,005
_0630
Shewana3_0631: Shewana3_0631 - hypothetical protein (RefSeq), at 741,265 to 741,966
_0631
Position (kb) 738
739
740
741
742 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 737.833 kb on + strand at 737.833 kb on + strand at 737.833 kb on + strand at 737.841 kb on - strand at 737.841 kb on - strand at 738.059 kb on + strand, within Shewana3_0628 at 738.249 kb on - strand, within Shewana3_0628 at 738.285 kb on + strand, within Shewana3_0628 at 738.327 kb on - strand, within Shewana3_0628 at 738.478 kb on + strand at 738.836 kb on + strand at 738.929 kb on + strand at 738.939 kb on + strand at 739.156 kb on - strand, within Shewana3_0630 at 739.214 kb on + strand, within Shewana3_0630 at 739.285 kb on + strand, within Shewana3_0630 at 739.759 kb on - strand, within Shewana3_0630 at 739.812 kb on + strand, within Shewana3_0630 at 739.972 kb on + strand, within Shewana3_0630 at 740.038 kb on - strand, within Shewana3_0630 at 740.094 kb on + strand, within Shewana3_0630 at 740.102 kb on - strand, within Shewana3_0630 at 740.102 kb on - strand, within Shewana3_0630 at 740.140 kb on + strand, within Shewana3_0630 at 740.284 kb on + strand, within Shewana3_0630 at 740.309 kb on + strand, within Shewana3_0630 at 740.381 kb on - strand, within Shewana3_0630 at 740.537 kb on - strand, within Shewana3_0630 at 740.633 kb on + strand, within Shewana3_0630 at 740.703 kb on + strand, within Shewana3_0630 at 740.703 kb on + strand, within Shewana3_0630 at 740.741 kb on + strand, within Shewana3_0630 at 740.792 kb on - strand at 740.908 kb on - strand at 740.923 kb on - strand at 740.969 kb on + strand at 740.975 kb on - strand at 740.994 kb on + strand at 740.997 kb on - strand at 741.161 kb on + strand at 741.245 kb on - strand at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.433 kb on - strand, within Shewana3_0631 at 741.448 kb on - strand, within Shewana3_0631 at 741.701 kb on - strand, within Shewana3_0631 at 741.763 kb on + strand, within Shewana3_0631 at 741.848 kb on - strand, within Shewana3_0631 at 741.994 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 737,833 + -1.7 737,833 + -1.3 737,833 + -1.8 737,841 - +0.6 737,841 - +0.3 738,059 + Shewana3_0628 0.16 -0.2 738,249 - Shewana3_0628 0.62 -2.0 738,285 + Shewana3_0628 0.71 -0.0 738,327 - Shewana3_0628 0.81 -0.2 738,478 + +0.1 738,836 + +0.6 738,929 + +0.4 738,939 + -0.2 739,156 - Shewana3_0630 0.15 -1.9 739,214 + Shewana3_0630 0.18 +0.6 739,285 + Shewana3_0630 0.21 -0.3 739,759 - Shewana3_0630 0.43 -1.6 739,812 + Shewana3_0630 0.45 -2.2 739,972 + Shewana3_0630 0.53 +0.2 740,038 - Shewana3_0630 0.56 -2.4 740,094 + Shewana3_0630 0.58 -2.4 740,102 - Shewana3_0630 0.59 +0.6 740,102 - Shewana3_0630 0.59 +0.4 740,140 + Shewana3_0630 0.60 +0.3 740,284 + Shewana3_0630 0.67 -2.4 740,309 + Shewana3_0630 0.68 +0.9 740,381 - Shewana3_0630 0.71 +0.5 740,537 - Shewana3_0630 0.79 +0.4 740,633 + Shewana3_0630 0.83 -2.4 740,703 + Shewana3_0630 0.86 +0.6 740,703 + Shewana3_0630 0.86 +0.7 740,741 + Shewana3_0630 0.88 +0.4 740,792 - -1.4 740,908 - +0.7 740,923 - -2.7 740,969 + -4.6 740,975 - +0.2 740,994 + +0.3 740,997 - +1.0 741,161 + -1.2 741,245 - -2.3 741,425 + Shewana3_0631 0.23 -0.3 741,425 + Shewana3_0631 0.23 -1.8 741,425 + Shewana3_0631 0.23 -1.8 741,433 - Shewana3_0631 0.24 -0.1 741,448 - Shewana3_0631 0.26 -2.0 741,701 - Shewana3_0631 0.62 -0.9 741,763 + Shewana3_0631 0.71 +0.7 741,848 - Shewana3_0631 0.83 +0.7 741,994 + -2.6
Or see this region's nucleotide sequence