Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0535 and Shewana3_0536 are separated by 4 nucleotides Shewana3_0536 and Shewana3_0537 are separated by 118 nucleotides Shewana3_0537 and Shewana3_0538 are separated by 81 nucleotides Shewana3_0538 and Shewana3_0539 are separated by 67 nucleotides
Shewana3_0535: Shewana3_0535 - major facilitator transporter (RefSeq), at 628,904 to 630,172
_0535
Shewana3_0536: Shewana3_0536 - hypothetical protein (RefSeq), at 630,177 to 631,040
_0536
Shewana3_0537: Shewana3_0537 - aspartate kinase (RefSeq), at 631,159 to 632,601
_0537
Shewana3_0538: Shewana3_0538 - hypothetical protein (RefSeq), at 632,683 to 633,102
_0538
Shewana3_0539: Shewana3_0539 - hypothetical protein (RefSeq), at 633,170 to 634,525
_0539
Position (kb) 631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 630.185 kb on - strand at 630.269 kb on + strand, within Shewana3_0536 at 630.381 kb on - strand, within Shewana3_0536 at 630.450 kb on - strand, within Shewana3_0536 at 630.540 kb on - strand, within Shewana3_0536 at 630.763 kb on - strand, within Shewana3_0536 at 630.786 kb on - strand, within Shewana3_0536 at 630.848 kb on + strand, within Shewana3_0536 at 631.016 kb on + strand at 631.016 kb on + strand at 631.016 kb on + strand at 631.024 kb on - strand at 631.024 kb on - strand at 631.336 kb on + strand, within Shewana3_0537 at 631.344 kb on - strand, within Shewana3_0537 at 631.378 kb on - strand, within Shewana3_0537 at 631.392 kb on + strand, within Shewana3_0537 at 631.526 kb on + strand, within Shewana3_0537 at 631.534 kb on - strand, within Shewana3_0537 at 631.608 kb on + strand, within Shewana3_0537 at 631.682 kb on - strand, within Shewana3_0537 at 631.877 kb on - strand, within Shewana3_0537 at 632.000 kb on + strand, within Shewana3_0537 at 632.131 kb on + strand, within Shewana3_0537 at 632.139 kb on - strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.204 kb on - strand, within Shewana3_0537 at 632.320 kb on - strand, within Shewana3_0537 at 632.320 kb on - strand, within Shewana3_0537 at 632.350 kb on - strand, within Shewana3_0537 at 632.412 kb on - strand, within Shewana3_0537 at 632.672 kb on - strand at 632.674 kb on + strand at 632.780 kb on + strand, within Shewana3_0538 at 632.853 kb on + strand, within Shewana3_0538 at 632.861 kb on + strand, within Shewana3_0538 at 632.901 kb on - strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.158 kb on - strand at 633.208 kb on + strand at 633.208 kb on + strand at 633.209 kb on + strand at 633.209 kb on + strand at 633.216 kb on - strand at 633.216 kb on - strand at 633.216 kb on - strand at 633.217 kb on - strand at 633.220 kb on + strand at 633.220 kb on + strand at 633.356 kb on + strand, within Shewana3_0539 at 633.399 kb on + strand, within Shewana3_0539 at 633.405 kb on - strand, within Shewana3_0539 at 633.444 kb on - strand, within Shewana3_0539 at 633.503 kb on + strand, within Shewana3_0539 at 633.503 kb on + strand, within Shewana3_0539 at 633.543 kb on + strand, within Shewana3_0539 at 633.543 kb on + strand, within Shewana3_0539
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 630,185 - -2.7 630,269 + Shewana3_0536 0.11 +0.7 630,381 - Shewana3_0536 0.24 +0.1 630,450 - Shewana3_0536 0.32 +1.0 630,540 - Shewana3_0536 0.42 +0.1 630,763 - Shewana3_0536 0.68 +0.8 630,786 - Shewana3_0536 0.70 +1.0 630,848 + Shewana3_0536 0.78 -1.7 631,016 + +0.5 631,016 + -2.2 631,016 + +0.4 631,024 - -1.9 631,024 - +0.5 631,336 + Shewana3_0537 0.12 -1.6 631,344 - Shewana3_0537 0.13 +1.1 631,378 - Shewana3_0537 0.15 +0.1 631,392 + Shewana3_0537 0.16 +0.4 631,526 + Shewana3_0537 0.25 +0.4 631,534 - Shewana3_0537 0.26 +0.8 631,608 + Shewana3_0537 0.31 +0.0 631,682 - Shewana3_0537 0.36 +0.3 631,877 - Shewana3_0537 0.50 -0.1 632,000 + Shewana3_0537 0.58 +0.4 632,131 + Shewana3_0537 0.67 -0.0 632,139 - Shewana3_0537 0.68 -1.4 632,196 + Shewana3_0537 0.72 -0.1 632,196 + Shewana3_0537 0.72 +0.7 632,196 + Shewana3_0537 0.72 -1.3 632,204 - Shewana3_0537 0.72 +0.3 632,320 - Shewana3_0537 0.80 -1.6 632,320 - Shewana3_0537 0.80 -1.2 632,350 - Shewana3_0537 0.83 +1.3 632,412 - Shewana3_0537 0.87 -2.1 632,672 - -1.8 632,674 + -2.7 632,780 + Shewana3_0538 0.23 -1.2 632,853 + Shewana3_0538 0.40 -1.8 632,861 + Shewana3_0538 0.42 -1.1 632,901 - Shewana3_0538 0.52 +0.6 633,039 + Shewana3_0538 0.85 +0.2 633,039 + Shewana3_0538 0.85 -1.8 633,039 + Shewana3_0538 0.85 +1.7 633,039 + Shewana3_0538 0.85 +0.1 633,039 + Shewana3_0538 0.85 +0.1 633,158 - -1.7 633,208 + +0.8 633,208 + -1.1 633,209 + +0.8 633,209 + +0.2 633,216 - -1.8 633,216 - +0.4 633,216 - -0.7 633,217 - +0.0 633,220 + -1.5 633,220 + +0.6 633,356 + Shewana3_0539 0.14 -2.3 633,399 + Shewana3_0539 0.17 +0.6 633,405 - Shewana3_0539 0.17 -3.6 633,444 - Shewana3_0539 0.20 +0.2 633,503 + Shewana3_0539 0.25 -1.9 633,503 + Shewana3_0539 0.25 +0.9 633,543 + Shewana3_0539 0.28 -1.3 633,543 + Shewana3_0539 0.28 -2.4
Or see this region's nucleotide sequence