Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0507 and Shewana3_0508 are separated by 91 nucleotides Shewana3_0508 and Shewana3_0509 are separated by 86 nucleotides Shewana3_0509 and Shewana3_0510 are separated by 27 nucleotides
Shewana3_0507: Shewana3_0507 - hypothetical protein (RefSeq), at 598,865 to 599,635
_0507
Shewana3_0508: Shewana3_0508 - major facilitator transporter (RefSeq), at 599,727 to 600,944
_0508
Shewana3_0509: Shewana3_0509 - short-chain dehydrogenase/reductase SDR (RefSeq), at 601,031 to 601,708
_0509
Shewana3_0510: Shewana3_0510 - biotin carboxyl carrier protein (RefSeq), at 601,736 to 602,191
_0510
Position (kb) 599
600
601 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 598.768 kb on + strand at 598.816 kb on + strand at 599.000 kb on - strand, within Shewana3_0507 at 599.287 kb on - strand, within Shewana3_0507 at 599.290 kb on + strand, within Shewana3_0507 at 599.305 kb on - strand, within Shewana3_0507 at 599.387 kb on - strand, within Shewana3_0507 at 599.640 kb on + strand at 599.648 kb on - strand at 599.760 kb on + strand at 599.768 kb on - strand at 599.768 kb on - strand at 599.768 kb on - strand at 599.806 kb on + strand at 599.814 kb on - strand at 599.814 kb on - strand at 599.916 kb on - strand, within Shewana3_0508 at 599.970 kb on - strand, within Shewana3_0508 at 600.148 kb on - strand, within Shewana3_0508 at 600.254 kb on - strand, within Shewana3_0508 at 600.423 kb on + strand, within Shewana3_0508 at 600.423 kb on + strand, within Shewana3_0508 at 600.457 kb on - strand, within Shewana3_0508 at 600.526 kb on + strand, within Shewana3_0508 at 600.534 kb on - strand, within Shewana3_0508 at 600.561 kb on - strand, within Shewana3_0508 at 600.595 kb on + strand, within Shewana3_0508 at 600.683 kb on + strand, within Shewana3_0508 at 600.686 kb on - strand, within Shewana3_0508 at 600.693 kb on + strand, within Shewana3_0508 at 600.731 kb on + strand, within Shewana3_0508 at 600.753 kb on - strand, within Shewana3_0508 at 600.759 kb on + strand, within Shewana3_0508 at 600.760 kb on + strand, within Shewana3_0508 at 600.768 kb on - strand, within Shewana3_0508 at 600.784 kb on + strand, within Shewana3_0508 at 600.784 kb on + strand, within Shewana3_0508 at 600.787 kb on - strand, within Shewana3_0508 at 600.792 kb on - strand, within Shewana3_0508 at 600.792 kb on - strand, within Shewana3_0508 at 600.836 kb on + strand at 600.845 kb on - strand at 600.889 kb on + strand at 601.128 kb on + strand, within Shewana3_0509 at 601.193 kb on - strand, within Shewana3_0509 at 601.308 kb on + strand, within Shewana3_0509 at 601.338 kb on - strand, within Shewana3_0509 at 601.426 kb on + strand, within Shewana3_0509 at 601.469 kb on + strand, within Shewana3_0509 at 601.521 kb on + strand, within Shewana3_0509 at 601.686 kb on - strand at 601.878 kb on - strand, within Shewana3_0510 at 601.904 kb on + strand, within Shewana3_0510
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 598,768 + -0.0 598,816 + -0.3 599,000 - Shewana3_0507 0.18 -0.0 599,287 - Shewana3_0507 0.55 -4.6 599,290 + Shewana3_0507 0.55 -2.4 599,305 - Shewana3_0507 0.57 +0.1 599,387 - Shewana3_0507 0.68 -2.5 599,640 + -2.8 599,648 - +0.6 599,760 + +0.6 599,768 - -1.9 599,768 - +0.1 599,768 - +0.3 599,806 + -2.3 599,814 - -1.5 599,814 - -0.6 599,916 - Shewana3_0508 0.16 -1.4 599,970 - Shewana3_0508 0.20 +1.2 600,148 - Shewana3_0508 0.35 -0.0 600,254 - Shewana3_0508 0.43 +0.2 600,423 + Shewana3_0508 0.57 +0.9 600,423 + Shewana3_0508 0.57 +0.8 600,457 - Shewana3_0508 0.60 +1.2 600,526 + Shewana3_0508 0.66 -0.3 600,534 - Shewana3_0508 0.66 +0.4 600,561 - Shewana3_0508 0.68 -0.6 600,595 + Shewana3_0508 0.71 +0.1 600,683 + Shewana3_0508 0.78 -1.9 600,686 - Shewana3_0508 0.79 +0.1 600,693 + Shewana3_0508 0.79 -0.6 600,731 + Shewana3_0508 0.82 -0.8 600,753 - Shewana3_0508 0.84 +0.1 600,759 + Shewana3_0508 0.85 +0.2 600,760 + Shewana3_0508 0.85 +0.2 600,768 - Shewana3_0508 0.85 -1.0 600,784 + Shewana3_0508 0.87 +1.1 600,784 + Shewana3_0508 0.87 -1.9 600,787 - Shewana3_0508 0.87 +0.3 600,792 - Shewana3_0508 0.87 -1.7 600,792 - Shewana3_0508 0.87 +0.4 600,836 + +0.8 600,845 - +0.5 600,889 + -1.8 601,128 + Shewana3_0509 0.14 +0.3 601,193 - Shewana3_0509 0.24 +0.2 601,308 + Shewana3_0509 0.41 +0.5 601,338 - Shewana3_0509 0.45 +0.2 601,426 + Shewana3_0509 0.58 +0.1 601,469 + Shewana3_0509 0.65 -0.4 601,521 + Shewana3_0509 0.72 +0.2 601,686 - +0.3 601,878 - Shewana3_0510 0.31 -2.0 601,904 + Shewana3_0510 0.37 -0.3
Or see this region's nucleotide sequence