Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0502

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0501 and Shewana3_0502 are separated by 260 nucleotidesShewana3_0502 and Shewana3_0503 are separated by 149 nucleotides Shewana3_0501: Shewana3_0501 - fatty acid cistrans isomerase (RefSeq), at 585,602 to 587,995 _0501 Shewana3_0502: Shewana3_0502 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 588,256 to 593,202 _0502 Shewana3_0503: Shewana3_0503 - flavoprotein oxygenase (RefSeq), at 593,352 to 593,978 _0503 Position (kb) 588 589 590 591 592 593 594Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 587.335 kb on + strand, within Shewana3_0501at 587.335 kb on + strand, within Shewana3_0501at 587.343 kb on - strand, within Shewana3_0501at 587.524 kb on + strand, within Shewana3_0501at 587.570 kb on - strand, within Shewana3_0501at 587.942 kb on - strandat 587.956 kb on - strandat 588.004 kb on - strandat 588.316 kb on - strandat 588.344 kb on - strandat 588.412 kb on - strandat 588.436 kb on - strandat 588.443 kb on - strandat 588.477 kb on - strandat 588.543 kb on + strandat 588.719 kb on - strandat 588.877 kb on - strand, within Shewana3_0502at 588.921 kb on - strand, within Shewana3_0502at 588.961 kb on + strand, within Shewana3_0502at 588.968 kb on - strand, within Shewana3_0502at 588.969 kb on - strand, within Shewana3_0502at 589.088 kb on + strand, within Shewana3_0502at 589.088 kb on + strand, within Shewana3_0502at 589.093 kb on + strand, within Shewana3_0502at 589.096 kb on - strand, within Shewana3_0502at 589.096 kb on - strand, within Shewana3_0502at 589.096 kb on - strand, within Shewana3_0502at 589.098 kb on + strand, within Shewana3_0502at 589.180 kb on - strand, within Shewana3_0502at 589.216 kb on - strand, within Shewana3_0502at 589.223 kb on - strand, within Shewana3_0502at 589.352 kb on - strand, within Shewana3_0502at 589.352 kb on - strand, within Shewana3_0502at 589.435 kb on - strand, within Shewana3_0502at 589.435 kb on - strand, within Shewana3_0502at 589.435 kb on - strand, within Shewana3_0502at 589.526 kb on - strand, within Shewana3_0502at 589.540 kb on - strand, within Shewana3_0502at 589.631 kb on - strand, within Shewana3_0502at 589.631 kb on - strand, within Shewana3_0502at 589.664 kb on + strand, within Shewana3_0502at 589.679 kb on - strand, within Shewana3_0502at 589.793 kb on - strand, within Shewana3_0502at 589.847 kb on - strand, within Shewana3_0502at 590.090 kb on + strand, within Shewana3_0502at 590.120 kb on - strand, within Shewana3_0502at 590.156 kb on + strand, within Shewana3_0502at 590.164 kb on - strand, within Shewana3_0502at 590.343 kb on + strand, within Shewana3_0502at 590.343 kb on + strand, within Shewana3_0502at 590.349 kb on - strand, within Shewana3_0502at 590.419 kb on + strand, within Shewana3_0502at 590.557 kb on + strand, within Shewana3_0502at 590.557 kb on + strand, within Shewana3_0502at 590.575 kb on - strand, within Shewana3_0502at 590.635 kb on - strand, within Shewana3_0502at 590.666 kb on + strand, within Shewana3_0502at 590.667 kb on - strand, within Shewana3_0502at 590.691 kb on + strand, within Shewana3_0502at 590.692 kb on - strand, within Shewana3_0502at 590.719 kb on - strand, within Shewana3_0502at 590.813 kb on + strand, within Shewana3_0502at 591.007 kb on + strand, within Shewana3_0502at 591.212 kb on + strand, within Shewana3_0502at 591.274 kb on - strand, within Shewana3_0502at 591.280 kb on + strand, within Shewana3_0502at 591.425 kb on - strand, within Shewana3_0502at 591.430 kb on + strand, within Shewana3_0502at 591.537 kb on + strand, within Shewana3_0502at 591.545 kb on - strand, within Shewana3_0502at 591.624 kb on - strand, within Shewana3_0502at 591.635 kb on + strand, within Shewana3_0502at 591.774 kb on + strand, within Shewana3_0502at 591.782 kb on - strand, within Shewana3_0502at 591.788 kb on - strand, within Shewana3_0502at 591.803 kb on - strand, within Shewana3_0502at 591.876 kb on + strand, within Shewana3_0502at 591.878 kb on + strand, within Shewana3_0502at 591.878 kb on + strand, within Shewana3_0502at 591.878 kb on + strand, within Shewana3_0502at 591.878 kb on + strand, within Shewana3_0502at 591.878 kb on + strand, within Shewana3_0502at 591.878 kb on + strand, within Shewana3_0502at 591.878 kb on + strand, within Shewana3_0502at 591.878 kb on + strand, within Shewana3_0502at 591.878 kb on + strand, within Shewana3_0502at 591.878 kb on + strand, within Shewana3_0502at 591.879 kb on + strand, within Shewana3_0502at 591.886 kb on - strand, within Shewana3_0502at 591.886 kb on - strand, within Shewana3_0502at 591.886 kb on - strand, within Shewana3_0502at 591.886 kb on - strand, within Shewana3_0502at 591.886 kb on - strand, within Shewana3_0502at 591.942 kb on - strand, within Shewana3_0502at 591.970 kb on - strand, within Shewana3_0502at 592.032 kb on + strand, within Shewana3_0502at 592.032 kb on + strand, within Shewana3_0502at 592.040 kb on - strand, within Shewana3_0502at 592.202 kb on + strand, within Shewana3_0502at 592.202 kb on + strand, within Shewana3_0502at 592.237 kb on + strand, within Shewana3_0502at 592.303 kb on + strand, within Shewana3_0502at 592.304 kb on - strand, within Shewana3_0502at 592.311 kb on - strand, within Shewana3_0502at 592.327 kb on + strand, within Shewana3_0502at 592.327 kb on + strand, within Shewana3_0502at 592.335 kb on - strand, within Shewana3_0502at 592.342 kb on + strand, within Shewana3_0502at 592.386 kb on + strand, within Shewana3_0502at 592.472 kb on - strand, within Shewana3_0502at 592.523 kb on + strand, within Shewana3_0502at 592.530 kb on - strand, within Shewana3_0502at 592.530 kb on - strand, within Shewana3_0502at 592.577 kb on - strand, within Shewana3_0502at 592.587 kb on - strand, within Shewana3_0502at 592.587 kb on - strand, within Shewana3_0502at 592.637 kb on + strand, within Shewana3_0502at 592.646 kb on + strand, within Shewana3_0502at 592.654 kb on - strand, within Shewana3_0502at 592.659 kb on - strand, within Shewana3_0502at 592.666 kb on - strand, within Shewana3_0502at 592.887 kb on - strandat 592.889 kb on + strandat 592.931 kb on - strandat 592.931 kb on - strandat 592.945 kb on - strandat 593.142 kb on - strandat 593.254 kb on + strandat 593.319 kb on + strandat 593.555 kb on - strand, within Shewana3_0503at 593.667 kb on - strand, within Shewana3_0503at 593.697 kb on - strand, within Shewana3_0503at 593.759 kb on + strand, within Shewana3_0503at 593.759 kb on + strand, within Shewana3_0503at 593.833 kb on - strand, within Shewana3_0503at 593.960 kb on + strandat 593.973 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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587,335 + Shewana3_0501 0.72 +0.5
587,335 + Shewana3_0501 0.72 -1.0
587,343 - Shewana3_0501 0.73 +0.2
587,524 + Shewana3_0501 0.80 -1.4
587,570 - Shewana3_0501 0.82 -1.9
587,942 - +0.2
587,956 - -1.3
588,004 - +0.8
588,316 - +0.6
588,344 - +0.1
588,412 - +0.3
588,436 - +1.5
588,443 - +0.0
588,477 - -2.0
588,543 + -2.3
588,719 - +0.4
588,877 - Shewana3_0502 0.13 -1.9
588,921 - Shewana3_0502 0.13 +0.6
588,961 + Shewana3_0502 0.14 +0.5
588,968 - Shewana3_0502 0.14 -0.8
588,969 - Shewana3_0502 0.14 -2.4
589,088 + Shewana3_0502 0.17 -2.4
589,088 + Shewana3_0502 0.17 +0.2
589,093 + Shewana3_0502 0.17 +0.4
589,096 - Shewana3_0502 0.17 +0.7
589,096 - Shewana3_0502 0.17 -0.2
589,096 - Shewana3_0502 0.17 +0.1
589,098 + Shewana3_0502 0.17 +0.3
589,180 - Shewana3_0502 0.19 +0.2
589,216 - Shewana3_0502 0.19 -0.1
589,223 - Shewana3_0502 0.20 -1.7
589,352 - Shewana3_0502 0.22 +0.4
589,352 - Shewana3_0502 0.22 -1.2
589,435 - Shewana3_0502 0.24 -1.8
589,435 - Shewana3_0502 0.24 +0.3
589,435 - Shewana3_0502 0.24 +0.4
589,526 - Shewana3_0502 0.26 -2.5
589,540 - Shewana3_0502 0.26 -1.7
589,631 - Shewana3_0502 0.28 -1.4
589,631 - Shewana3_0502 0.28 -1.3
589,664 + Shewana3_0502 0.28 +0.5
589,679 - Shewana3_0502 0.29 +0.2
589,793 - Shewana3_0502 0.31 -2.8
589,847 - Shewana3_0502 0.32 +0.6
590,090 + Shewana3_0502 0.37 +1.5
590,120 - Shewana3_0502 0.38 -2.1
590,156 + Shewana3_0502 0.38 -1.6
590,164 - Shewana3_0502 0.39 +0.9
590,343 + Shewana3_0502 0.42 -0.1
590,343 + Shewana3_0502 0.42 +0.6
590,349 - Shewana3_0502 0.42 +0.1
590,419 + Shewana3_0502 0.44 +0.4
590,557 + Shewana3_0502 0.47 +0.6
590,557 + Shewana3_0502 0.47 -0.5
590,575 - Shewana3_0502 0.47 -2.1
590,635 - Shewana3_0502 0.48 +0.1
590,666 + Shewana3_0502 0.49 -1.6
590,667 - Shewana3_0502 0.49 -2.8
590,691 + Shewana3_0502 0.49 -0.0
590,692 - Shewana3_0502 0.49 -2.4
590,719 - Shewana3_0502 0.50 +0.1
590,813 + Shewana3_0502 0.52 +2.0
591,007 + Shewana3_0502 0.56 +0.8
591,212 + Shewana3_0502 0.60 -0.1
591,274 - Shewana3_0502 0.61 +0.2
591,280 + Shewana3_0502 0.61 -0.5
591,425 - Shewana3_0502 0.64 -0.6
591,430 + Shewana3_0502 0.64 +0.3
591,537 + Shewana3_0502 0.66 +1.7
591,545 - Shewana3_0502 0.66 -1.8
591,624 - Shewana3_0502 0.68 +0.6
591,635 + Shewana3_0502 0.68 -0.4
591,774 + Shewana3_0502 0.71 +0.8
591,782 - Shewana3_0502 0.71 +0.5
591,788 - Shewana3_0502 0.71 +1.0
591,803 - Shewana3_0502 0.72 +0.4
591,876 + Shewana3_0502 0.73 +0.2
591,878 + Shewana3_0502 0.73 +1.3
591,878 + Shewana3_0502 0.73 +0.7
591,878 + Shewana3_0502 0.73 +0.6
591,878 + Shewana3_0502 0.73 -0.4
591,878 + Shewana3_0502 0.73 -1.6
591,878 + Shewana3_0502 0.73 -0.0
591,878 + Shewana3_0502 0.73 +0.3
591,878 + Shewana3_0502 0.73 +0.2
591,878 + Shewana3_0502 0.73 -1.6
591,878 + Shewana3_0502 0.73 +0.1
591,879 + Shewana3_0502 0.73 +0.6
591,886 - Shewana3_0502 0.73 -0.3
591,886 - Shewana3_0502 0.73 +0.6
591,886 - Shewana3_0502 0.73 +0.4
591,886 - Shewana3_0502 0.73 +1.3
591,886 - Shewana3_0502 0.73 -4.1
591,942 - Shewana3_0502 0.75 +0.8
591,970 - Shewana3_0502 0.75 +0.4
592,032 + Shewana3_0502 0.76 +0.4
592,032 + Shewana3_0502 0.76 -1.6
592,040 - Shewana3_0502 0.76 +0.4
592,202 + Shewana3_0502 0.80 +0.9
592,202 + Shewana3_0502 0.80 +0.3
592,237 + Shewana3_0502 0.80 -1.7
592,303 + Shewana3_0502 0.82 -1.9
592,304 - Shewana3_0502 0.82 +0.4
592,311 - Shewana3_0502 0.82 -1.7
592,327 + Shewana3_0502 0.82 -0.1
592,327 + Shewana3_0502 0.82 +0.4
592,335 - Shewana3_0502 0.82 -1.6
592,342 + Shewana3_0502 0.83 -0.2
592,386 + Shewana3_0502 0.83 +0.5
592,472 - Shewana3_0502 0.85 +0.9
592,523 + Shewana3_0502 0.86 +1.1
592,530 - Shewana3_0502 0.86 -0.2
592,530 - Shewana3_0502 0.86 +0.2
592,577 - Shewana3_0502 0.87 +0.3
592,587 - Shewana3_0502 0.88 -1.4
592,587 - Shewana3_0502 0.88 +1.1
592,637 + Shewana3_0502 0.89 +0.5
592,646 + Shewana3_0502 0.89 +0.7
592,654 - Shewana3_0502 0.89 -0.1
592,659 - Shewana3_0502 0.89 +0.7
592,666 - Shewana3_0502 0.89 +0.3
592,887 - +0.2
592,889 + -3.5
592,931 - -0.2
592,931 - -0.6
592,945 - +0.3
593,142 - +0.4
593,254 + -0.2
593,319 + +0.3
593,555 - Shewana3_0503 0.32 +0.5
593,667 - Shewana3_0503 0.50 +0.3
593,697 - Shewana3_0503 0.55 +0.6
593,759 + Shewana3_0503 0.65 +0.8
593,759 + Shewana3_0503 0.65 +0.2
593,833 - Shewana3_0503 0.77 +0.3
593,960 + -1.6
593,973 + -0.0

Or see this region's nucleotide sequence