Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0492 and Shewana3_0493 are separated by 86 nucleotides Shewana3_0493 and Shewana3_0494 are separated by 2 nucleotides Shewana3_0494 and Shewana3_0495 are separated by 119 nucleotides Shewana3_0495 and Shewana3_0496 are separated by 9 nucleotides
Shewana3_0492: Shewana3_0492 - formate-dependent nitrite reductase, NrfG protein (RefSeq), at 575,461 to 576,135
_0492
Shewana3_0493: Shewana3_0493 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 576,222 to 576,929
_0493
Shewana3_0494: Shewana3_0494 - polysulphide reductase, NrfD (RefSeq), at 576,932 to 577,879
_0494
Shewana3_0495: Shewana3_0495 - no description, at 577,999 to 578,470
_0495
Shewana3_0496: Shewana3_0496 - periplasmic copper-binding (RefSeq), at 578,480 to 579,754
_0496
Position (kb) 576
577
578 Strain fitness (log2 ratio) -2
-1
0
1 at 576.084 kb on + strand at 576.092 kb on - strand at 576.274 kb on - strand at 576.476 kb on + strand, within Shewana3_0493 at 576.509 kb on - strand, within Shewana3_0493 at 576.816 kb on + strand, within Shewana3_0493 at 576.824 kb on - strand, within Shewana3_0493 at 576.824 kb on - strand, within Shewana3_0493 at 576.893 kb on - strand at 577.039 kb on - strand, within Shewana3_0494 at 577.128 kb on + strand, within Shewana3_0494 at 577.393 kb on + strand, within Shewana3_0494 at 577.549 kb on - strand, within Shewana3_0494 at 577.559 kb on - strand, within Shewana3_0494 at 577.884 kb on + strand at 578.142 kb on + strand, within Shewana3_0495 at 578.268 kb on + strand, within Shewana3_0495 at 578.350 kb on - strand, within Shewana3_0495 at 578.366 kb on - strand, within Shewana3_0495 at 578.727 kb on + strand, within Shewana3_0496
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 576,084 + +0.9 576,092 - +0.5 576,274 - +0.1 576,476 + Shewana3_0493 0.36 -2.6 576,509 - Shewana3_0493 0.41 -0.8 576,816 + Shewana3_0493 0.84 -2.4 576,824 - Shewana3_0493 0.85 +0.5 576,824 - Shewana3_0493 0.85 -1.7 576,893 - -0.3 577,039 - Shewana3_0494 0.11 +0.5 577,128 + Shewana3_0494 0.21 +1.3 577,393 + Shewana3_0494 0.49 +0.3 577,549 - Shewana3_0494 0.65 +1.3 577,559 - Shewana3_0494 0.66 -2.1 577,884 + +0.9 578,142 + Shewana3_0495 0.30 +0.5 578,268 + Shewana3_0495 0.57 +0.3 578,350 - Shewana3_0495 0.74 +0.4 578,366 - Shewana3_0495 0.78 +0.4 578,727 + Shewana3_0496 0.19 +0.4
Or see this region's nucleotide sequence