Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0480 and Shewana3_0481 overlap by 10 nucleotides Shewana3_0481 and Shewana3_0482 are separated by 45 nucleotides
Shewana3_0480: Shewana3_0480 - putative PAS/PAC sensor protein (RefSeq), at 557,774 to 562,834
_0480
Shewana3_0481: Shewana3_0481 - response regulator receiver protein (RefSeq), at 562,825 to 564,396
_0481
Shewana3_0482: Shewana3_0482 - peptidase S9 prolyl oligopeptidase (RefSeq), at 564,442 to 566,502
_0482
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 561.844 kb on + strand, within Shewana3_0480 at 562.099 kb on + strand, within Shewana3_0480 at 562.105 kb on + strand, within Shewana3_0480 at 562.105 kb on + strand, within Shewana3_0480 at 562.147 kb on - strand, within Shewana3_0480 at 562.160 kb on - strand, within Shewana3_0480 at 562.160 kb on - strand, within Shewana3_0480 at 562.162 kb on - strand, within Shewana3_0480 at 562.216 kb on - strand, within Shewana3_0480 at 562.329 kb on - strand at 562.336 kb on + strand at 562.392 kb on + strand at 562.392 kb on + strand at 562.400 kb on - strand at 562.400 kb on - strand at 562.667 kb on + strand at 562.716 kb on + strand at 562.724 kb on - strand at 562.756 kb on + strand at 562.780 kb on - strand at 562.791 kb on + strand at 562.799 kb on - strand at 562.845 kb on + strand at 562.875 kb on + strand at 562.889 kb on - strand at 562.992 kb on + strand, within Shewana3_0481 at 563.000 kb on - strand, within Shewana3_0481 at 563.072 kb on + strand, within Shewana3_0481 at 563.160 kb on + strand, within Shewana3_0481 at 563.168 kb on - strand, within Shewana3_0481 at 563.183 kb on - strand, within Shewana3_0481 at 563.190 kb on - strand, within Shewana3_0481 at 563.192 kb on + strand, within Shewana3_0481 at 563.365 kb on - strand, within Shewana3_0481 at 563.445 kb on + strand, within Shewana3_0481 at 563.649 kb on + strand, within Shewana3_0481 at 563.793 kb on + strand, within Shewana3_0481 at 563.851 kb on - strand, within Shewana3_0481 at 563.984 kb on - strand, within Shewana3_0481 at 563.984 kb on - strand, within Shewana3_0481 at 563.995 kb on + strand, within Shewana3_0481 at 564.166 kb on - strand, within Shewana3_0481 at 564.240 kb on + strand at 564.240 kb on + strand at 564.395 kb on + strand at 564.408 kb on - strand at 564.420 kb on + strand at 564.611 kb on + strand at 564.952 kb on - strand, within Shewana3_0482 at 565.043 kb on + strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.144 kb on - strand, within Shewana3_0482 at 565.167 kb on - strand, within Shewana3_0482
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 561,844 + Shewana3_0480 0.80 +0.0 562,099 + Shewana3_0480 0.85 -1.9 562,105 + Shewana3_0480 0.86 +0.4 562,105 + Shewana3_0480 0.86 +0.2 562,147 - Shewana3_0480 0.86 +0.8 562,160 - Shewana3_0480 0.87 +0.3 562,160 - Shewana3_0480 0.87 +0.1 562,162 - Shewana3_0480 0.87 +0.5 562,216 - Shewana3_0480 0.88 -2.1 562,329 - +0.3 562,336 + +0.4 562,392 + -1.6 562,392 + -0.2 562,400 - +1.7 562,400 - +0.6 562,667 + +0.5 562,716 + +0.3 562,724 - -2.7 562,756 + -2.0 562,780 - +0.1 562,791 + -2.0 562,799 - -1.8 562,845 + +0.6 562,875 + +0.4 562,889 - -2.2 562,992 + Shewana3_0481 0.11 +0.2 563,000 - Shewana3_0481 0.11 +0.2 563,072 + Shewana3_0481 0.16 -0.7 563,160 + Shewana3_0481 0.21 -0.0 563,168 - Shewana3_0481 0.22 +0.2 563,183 - Shewana3_0481 0.23 +0.4 563,190 - Shewana3_0481 0.23 -0.4 563,192 + Shewana3_0481 0.23 +1.6 563,365 - Shewana3_0481 0.34 +0.2 563,445 + Shewana3_0481 0.39 -2.3 563,649 + Shewana3_0481 0.52 +0.7 563,793 + Shewana3_0481 0.62 +0.7 563,851 - Shewana3_0481 0.65 -0.8 563,984 - Shewana3_0481 0.74 -0.9 563,984 - Shewana3_0481 0.74 +0.5 563,995 + Shewana3_0481 0.74 +0.8 564,166 - Shewana3_0481 0.85 -1.7 564,240 + +0.2 564,240 + -0.1 564,395 + +0.2 564,408 - +0.2 564,420 + -0.2 564,611 + +0.5 564,952 - Shewana3_0482 0.25 -3.2 565,043 + Shewana3_0482 0.29 -0.7 565,144 - Shewana3_0482 0.34 +0.3 565,144 - Shewana3_0482 0.34 -2.0 565,144 - Shewana3_0482 0.34 -2.0 565,144 - Shewana3_0482 0.34 +0.3 565,167 - Shewana3_0482 0.35 +0.5
Or see this region's nucleotide sequence