Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0428 and Shewana3_0429 are separated by 140 nucleotides Shewana3_0429 and Shewana3_0430 are separated by 230 nucleotides
Shewana3_0428: Shewana3_0428 - dihydrolipoamide dehydrogenase (RefSeq), at 490,091 to 491,518
_0428
Shewana3_0429: Shewana3_0429 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 491,659 to 496,122
_0429
Shewana3_0430: Shewana3_0430 - patatin (RefSeq), at 496,353 to 498,572
_0430
Position (kb) 491
492
493
494
495
496
497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 491.811 kb on - strand at 491.896 kb on + strand at 491.904 kb on - strand at 491.904 kb on - strand at 492.015 kb on + strand at 492.301 kb on - strand, within Shewana3_0429 at 492.376 kb on - strand, within Shewana3_0429 at 492.423 kb on - strand, within Shewana3_0429 at 492.435 kb on + strand, within Shewana3_0429 at 492.535 kb on + strand, within Shewana3_0429 at 492.713 kb on - strand, within Shewana3_0429 at 492.794 kb on + strand, within Shewana3_0429 at 492.794 kb on + strand, within Shewana3_0429 at 492.825 kb on - strand, within Shewana3_0429 at 492.935 kb on + strand, within Shewana3_0429 at 492.937 kb on + strand, within Shewana3_0429 at 492.937 kb on + strand, within Shewana3_0429 at 493.234 kb on + strand, within Shewana3_0429 at 493.306 kb on - strand, within Shewana3_0429 at 493.329 kb on + strand, within Shewana3_0429 at 493.443 kb on - strand, within Shewana3_0429 at 493.552 kb on - strand, within Shewana3_0429 at 493.565 kb on + strand, within Shewana3_0429 at 493.574 kb on - strand, within Shewana3_0429 at 493.701 kb on + strand, within Shewana3_0429 at 493.701 kb on + strand, within Shewana3_0429 at 493.829 kb on - strand, within Shewana3_0429 at 493.912 kb on + strand, within Shewana3_0429 at 493.926 kb on - strand, within Shewana3_0429 at 493.967 kb on + strand, within Shewana3_0429 at 494.141 kb on - strand, within Shewana3_0429 at 494.146 kb on - strand, within Shewana3_0429 at 494.210 kb on + strand, within Shewana3_0429 at 494.238 kb on + strand, within Shewana3_0429 at 494.241 kb on - strand, within Shewana3_0429 at 494.327 kb on + strand, within Shewana3_0429 at 494.340 kb on - strand, within Shewana3_0429 at 494.342 kb on + strand, within Shewana3_0429 at 494.342 kb on + strand, within Shewana3_0429 at 494.342 kb on + strand, within Shewana3_0429 at 494.350 kb on - strand, within Shewana3_0429 at 494.420 kb on + strand, within Shewana3_0429 at 494.428 kb on - strand, within Shewana3_0429 at 494.473 kb on + strand, within Shewana3_0429 at 494.566 kb on - strand, within Shewana3_0429 at 494.607 kb on + strand, within Shewana3_0429 at 494.708 kb on - strand, within Shewana3_0429 at 494.751 kb on - strand, within Shewana3_0429 at 494.884 kb on - strand, within Shewana3_0429 at 494.897 kb on + strand, within Shewana3_0429 at 494.897 kb on - strand, within Shewana3_0429 at 494.911 kb on + strand, within Shewana3_0429 at 494.948 kb on + strand, within Shewana3_0429 at 494.975 kb on + strand, within Shewana3_0429 at 494.986 kb on + strand, within Shewana3_0429 at 495.238 kb on - strand, within Shewana3_0429 at 495.267 kb on + strand, within Shewana3_0429 at 495.280 kb on + strand, within Shewana3_0429 at 495.325 kb on + strand, within Shewana3_0429 at 495.325 kb on + strand, within Shewana3_0429 at 495.325 kb on + strand, within Shewana3_0429 at 495.331 kb on + strand, within Shewana3_0429 at 495.331 kb on + strand, within Shewana3_0429 at 495.371 kb on - strand, within Shewana3_0429 at 495.371 kb on - strand, within Shewana3_0429 at 495.385 kb on - strand, within Shewana3_0429 at 495.385 kb on - strand, within Shewana3_0429 at 495.386 kb on + strand, within Shewana3_0429 at 495.481 kb on + strand, within Shewana3_0429 at 495.489 kb on - strand, within Shewana3_0429 at 495.534 kb on + strand, within Shewana3_0429 at 495.608 kb on + strand, within Shewana3_0429 at 495.711 kb on - strand at 495.816 kb on + strand at 496.003 kb on - strand at 496.017 kb on - strand at 496.029 kb on + strand at 496.117 kb on + strand at 496.117 kb on - strand at 496.429 kb on - strand at 496.429 kb on - strand at 496.587 kb on + strand, within Shewana3_0430 at 496.824 kb on + strand, within Shewana3_0430 at 496.914 kb on + strand, within Shewana3_0430 at 496.933 kb on - strand, within Shewana3_0430 at 496.996 kb on - strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.073 kb on + strand, within Shewana3_0430
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 491,811 - +0.8 491,896 + +0.5 491,904 - +1.8 491,904 - -0.9 492,015 + +1.1 492,301 - Shewana3_0429 0.14 +0.8 492,376 - Shewana3_0429 0.16 +0.2 492,423 - Shewana3_0429 0.17 -1.3 492,435 + Shewana3_0429 0.17 +0.6 492,535 + Shewana3_0429 0.20 -1.9 492,713 - Shewana3_0429 0.24 +0.8 492,794 + Shewana3_0429 0.25 +0.2 492,794 + Shewana3_0429 0.25 +0.5 492,825 - Shewana3_0429 0.26 +0.4 492,935 + Shewana3_0429 0.29 +0.6 492,937 + Shewana3_0429 0.29 -0.3 492,937 + Shewana3_0429 0.29 -0.0 493,234 + Shewana3_0429 0.35 +0.6 493,306 - Shewana3_0429 0.37 -1.9 493,329 + Shewana3_0429 0.37 +0.4 493,443 - Shewana3_0429 0.40 -1.9 493,552 - Shewana3_0429 0.42 +0.7 493,565 + Shewana3_0429 0.43 -1.9 493,574 - Shewana3_0429 0.43 -1.9 493,701 + Shewana3_0429 0.46 +0.6 493,701 + Shewana3_0429 0.46 +1.0 493,829 - Shewana3_0429 0.49 -2.8 493,912 + Shewana3_0429 0.50 +3.3 493,926 - Shewana3_0429 0.51 -1.6 493,967 + Shewana3_0429 0.52 -1.9 494,141 - Shewana3_0429 0.56 -1.2 494,146 - Shewana3_0429 0.56 +0.4 494,210 + Shewana3_0429 0.57 +0.5 494,238 + Shewana3_0429 0.58 +1.0 494,241 - Shewana3_0429 0.58 +0.7 494,327 + Shewana3_0429 0.60 -3.6 494,340 - Shewana3_0429 0.60 +0.5 494,342 + Shewana3_0429 0.60 -0.4 494,342 + Shewana3_0429 0.60 -1.8 494,342 + Shewana3_0429 0.60 +0.9 494,350 - Shewana3_0429 0.60 -0.8 494,420 + Shewana3_0429 0.62 +0.3 494,428 - Shewana3_0429 0.62 +0.4 494,473 + Shewana3_0429 0.63 +0.3 494,566 - Shewana3_0429 0.65 +1.2 494,607 + Shewana3_0429 0.66 -2.3 494,708 - Shewana3_0429 0.68 -2.6 494,751 - Shewana3_0429 0.69 +0.4 494,884 - Shewana3_0429 0.72 +0.7 494,897 + Shewana3_0429 0.73 -0.7 494,897 - Shewana3_0429 0.73 +0.5 494,911 + Shewana3_0429 0.73 +0.4 494,948 + Shewana3_0429 0.74 +1.8 494,975 + Shewana3_0429 0.74 +1.5 494,986 + Shewana3_0429 0.75 +0.1 495,238 - Shewana3_0429 0.80 +0.9 495,267 + Shewana3_0429 0.81 -1.9 495,280 + Shewana3_0429 0.81 -2.2 495,325 + Shewana3_0429 0.82 -0.6 495,325 + Shewana3_0429 0.82 +0.7 495,325 + Shewana3_0429 0.82 -2.0 495,331 + Shewana3_0429 0.82 +1.1 495,331 + Shewana3_0429 0.82 +0.4 495,371 - Shewana3_0429 0.83 +1.0 495,371 - Shewana3_0429 0.83 +1.1 495,385 - Shewana3_0429 0.83 +0.5 495,385 - Shewana3_0429 0.83 +0.5 495,386 + Shewana3_0429 0.83 +0.7 495,481 + Shewana3_0429 0.86 +1.1 495,489 - Shewana3_0429 0.86 +0.3 495,534 + Shewana3_0429 0.87 +1.2 495,608 + Shewana3_0429 0.88 -0.7 495,711 - -0.1 495,816 + -0.5 496,003 - +0.5 496,017 - +0.3 496,029 + -1.0 496,117 + -0.9 496,117 - +0.7 496,429 - +0.7 496,429 - -1.6 496,587 + Shewana3_0430 0.11 -1.9 496,824 + Shewana3_0430 0.21 +0.8 496,914 + Shewana3_0430 0.25 -0.1 496,933 - Shewana3_0430 0.26 +0.9 496,996 - Shewana3_0430 0.29 +0.8 497,006 + Shewana3_0430 0.29 -1.6 497,006 + Shewana3_0430 0.29 +0.4 497,006 + Shewana3_0430 0.29 +1.5 497,073 + Shewana3_0430 0.32 -0.4
Or see this region's nucleotide sequence